General information for g15457.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g15457 is located on chr_4: 5520793..5521775 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15457 | g15457.t19 | TTS | g15457.t19 | 5519529 | 5519529 |
| chr_4 | g15457 | g15457.t19 | isoform | g15457.t19 | 5519531 | 5521775 |
| chr_4 | g15457 | g15457.t19 | exon | g15457.t19.exon1 | 5519531 | 5520098 |
| chr_4 | g15457 | g15457.t19 | cds | g15457.t19.CDS1 | 5519841 | 5520098 |
| chr_4 | g15457 | g15457.t19 | exon | g15457.t19.exon2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t19 | cds | g15457.t19.CDS2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t19 | exon | g15457.t19.exon3 | 5520464 | 5520701 |
| chr_4 | g15457 | g15457.t19 | cds | g15457.t19.CDS3 | 5520464 | 5520701 |
| chr_4 | g15457 | g15457.t19 | exon | g15457.t19.exon4 | 5521567 | 5521775 |
| chr_4 | g15457 | g15457.t19 | cds | g15457.t19.CDS4 | 5521567 | 5521567 |
| chr_4 | g15457 | g15457.t19 | TSS | g15457.t19 | 5521865 | 5521865 |
Sequences
>g15457.t19 Gene=g15457 Length=1262
ATGGCACCATTACGTTGGGGAATTGCATCAGCTGGTAAAATTTCAAATGACTTTTGTGCA
GCTTTATCAACATATTCTCAAGATGATCATCAGGTCGTCGCGGTTGCGGCTCGCTCATTG
GAGGATGCAAAGGAATTTGCAGAAACATTCAATATTCCTAGGACTCATGAAGGTTACCAA
AAATTAGCTCAGGATCCAGAAGTTGGTGATGTTGGATGGTGGCAAACATATTCTTTGTGA
AAAGCCTTTGACATTAAATGTAAAACAAGCTGAACAACTTTTAAATCATGCAAAAGAGAA
GAAATTATTTTGTATGGAAGCAATTTGGTCAAGATATTTTCCAATTTATAGACAACTTAA
AGCTCGTATTAACAATGGTGATCTTGGTGACATTAAAGAAGTTTATGCTGAATTTGGTGT
TGAAATGGCAGATGTTGATCGTGTAATGAAAAATGAACTTGGAGGTGGTTCCACATTGGA
TATTGGAACCTATGCAATTCAATTTTCTCAATTTGTCTTTCGTGCTGAACCGACATCAAT
TAAAGCAACTGGCAAATTAAATGAAGAAGGTGTTGATACTGAAACTGAAGTTGAATTAAA
ATATCCAAATGGTGGTGTTGCTCGTTATAAGACTAATTCAACAAAAGAACTCAGCAACAT
TGCAACTGTAACAGGAAGCAAAGGCACAATGAAGCTCCATACTTTCTGGTGTCCAACTGA
ATTAGAAGATGTTGATGGTCAAATGAAAAAATTCGAATTACCACAAAATCGACTTGGTAA
ATTTATTTACTTCCATGGTGCTGGCATGCGATATGAAGCAGAAGAAGTAAGAAGATGCAT
CAATGAAGGTTTGACTGAAAGTGAAGATGCAACACATAATGACAGTCTTGTCATTGCTCG
TATTCGTGATGAAATTCGTAGACAACTTGGTGTTAAATTTGATGAAGACTGAAATTTAAT
GGAAACTAAATTATGAAATGGATCTCTTGAAATGTGACATGATAAGCAAAGAAATAAGAA
AATTGTTAGTTTTGTATAAATATTGAATTATGAGGAAGAGAAGAAATACCAAAAATGTCC
CAAAAAATTAATATATTTCATAATATCCGAACGAAATTTTTTTCATTCCTGTAATATTTT
GTTTGGTTATATTTAATTATTTGAACGTCGATATATTTTTAAGTTTTATTTTAATCTATT
ATTTTGTATGCACGAATGAAATTCATTTATCATAACAATAAAATAAAATTACATATTTTG
CA
>g15457.t19 Gene=g15457 Length=247
MLDGGKHILCEKPLTLNVKQAEQLLNHAKEKKLFCMEAIWSRYFPIYRQLKARINNGDLG
DIKEVYAEFGVEMADVDRVMKNELGGGSTLDIGTYAIQFSQFVFRAEPTSIKATGKLNEE
GVDTETEVELKYPNGGVARYKTNSTKELSNIATVTGSKGTMKLHTFWCPTELEDVDGQMK
KFELPQNRLGKFIYFHGAGMRYEAEEVRRCINEGLTESEDATHNDSLVIARIRDEIRRQL
GVKFDED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15457.t19 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 40 | 0.0e+00 |
| 7 | g15457.t19 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 41 | 247 | 0.0e+00 |
| 3 | g15457.t19 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 1 | 246 | 0.0e+00 |
| 1 | g15457.t19 | Pfam | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold | 2 | 35 | 1.1e-05 |
| 2 | g15457.t19 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 51 | 211 | 0.0e+00 |
| 4 | g15457.t19 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 64 | 1.0e-07 |
| 5 | g15457.t19 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 44 | 212 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
