General information for g15457.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g15457 is located on chr_4: 5520793..5521775 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15457 | g15457.t28 | TTS | g15457.t28 | 5519529 | 5519529 |
| chr_4 | g15457 | g15457.t28 | isoform | g15457.t28 | 5519531 | 5521775 |
| chr_4 | g15457 | g15457.t28 | exon | g15457.t28.exon1 | 5519531 | 5520098 |
| chr_4 | g15457 | g15457.t28 | cds | g15457.t28.CDS1 | 5519841 | 5520098 |
| chr_4 | g15457 | g15457.t28 | exon | g15457.t28.exon2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t28 | cds | g15457.t28.CDS2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t28 | exon | g15457.t28.exon3 | 5520464 | 5520652 |
| chr_4 | g15457 | g15457.t28 | cds | g15457.t28.CDS3 | 5520464 | 5520652 |
| chr_4 | g15457 | g15457.t28 | exon | g15457.t28.exon4 | 5521605 | 5521775 |
| chr_4 | g15457 | g15457.t28 | cds | g15457.t28.CDS4 | 5521605 | 5521609 |
| chr_4 | g15457 | g15457.t28 | TSS | g15457.t28 | 5521865 | 5521865 |
Sequences
>g15457.t28 Gene=g15457 Length=1175
ATGGCACCATTACGTTGGGGAATTGCATCAGCTGGTAAAATTTCAAATGACTTTTGTGCA
GCTTTATCAACATATTCTCAAGATGATCATCAGGTCGTCGCGGTTGCGGCTCGCTCATTG
GAGGATGCAAAGGAATTTGCAGAAACATTCAATATTCCTAGGACTCATGAATGTAAAACA
AGCTGAACAACTTTTAAATCATGCAAAAGAGAAGAAATTATTTTGTATGGAAGCAATTTG
GTCAAGATATTTTCCAATTTATAGACAACTTAAAGCTCGTATTAACAATGGTGATCTTGG
TGACATTAAAGAAGTTTATGCTGAATTTGGTGTTGAAATGGCAGATGTTGATCGTGTAAT
GAAAAATGAACTTGGAGGTGGTTCCACATTGGATATTGGAACCTATGCAATTCAATTTTC
TCAATTTGTCTTTCGTGCTGAACCGACATCAATTAAAGCAACTGGCAAATTAAATGAAGA
AGGTGTTGATACTGAAACTGAAGTTGAATTAAAATATCCAAATGGTGGTGTTGCTCGTTA
TAAGACTAATTCAACAAAAGAACTCAGCAACATTGCAACTGTAACAGGAAGCAAAGGCAC
AATGAAGCTCCATACTTTCTGGTGTCCAACTGAATTAGAAGATGTTGATGGTCAAATGAA
AAAATTCGAATTACCACAAAATCGACTTGGTAAATTTATTTACTTCCATGGTGCTGGCAT
GCGATATGAAGCAGAAGAAGTAAGAAGATGCATCAATGAAGGTTTGACTGAAAGTGAAGA
TGCAACACATAATGACAGTCTTGTCATTGCTCGTATTCGTGATGAAATTCGTAGACAACT
TGGTGTTAAATTTGATGAAGACTGAAATTTAATGGAAACTAAATTATGAAATGGATCTCT
TGAAATGTGACATGATAAGCAAAGAAATAAGAAAATTGTTAGTTTTGTATAAATATTGAA
TTATGAGGAAGAGAAGAAATACCAAAAATGTCCCAAAAAATTAATATATTTCATAATATC
CGAACGAAATTTTTTTCATTCCTGTAATATTTTGTTTGGTTATATTTAATTATTTGAACG
TCGATATATTTTTAAGTTTTATTTTAATCTATTATTTTGTATGCACGAATGAAATTCATT
TATCATAACAATAAAATAAAATTACATATTTTGCA
>g15457.t28 Gene=g15457 Length=232
MNVKQAEQLLNHAKEKKLFCMEAIWSRYFPIYRQLKARINNGDLGDIKEVYAEFGVEMAD
VDRVMKNELGGGSTLDIGTYAIQFSQFVFRAEPTSIKATGKLNEEGVDTETEVELKYPNG
GVARYKTNSTKELSNIATVTGSKGTMKLHTFWCPTELEDVDGQMKKFELPQNRLGKFIYF
HGAGMRYEAEEVRRCINEGLTESEDATHNDSLVIARIRDEIRRQLGVKFDED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15457.t28 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 23 | 232 | 0 |
| 2 | g15457.t28 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 1 | 230 | 0 |
| 3 | g15457.t28 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 1 | 230 | 0 |
| 1 | g15457.t28 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 36 | 197 | 0 |
| 4 | g15457.t28 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 29 | 197 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
