General information for g15457.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1-2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g15457 is located on chr_4: 5520793..5521775 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15457 | g15457.t29 | TTS | g15457.t29 | 5519529 | 5519529 |
| chr_4 | g15457 | g15457.t29 | isoform | g15457.t29 | 5519841 | 5520609 |
| chr_4 | g15457 | g15457.t29 | exon | g15457.t29.exon1 | 5519841 | 5520098 |
| chr_4 | g15457 | g15457.t29 | cds | g15457.t29.CDS1 | 5519841 | 5520098 |
| chr_4 | g15457 | g15457.t29 | exon | g15457.t29.exon2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t29 | cds | g15457.t29.CDS2 | 5520159 | 5520405 |
| chr_4 | g15457 | g15457.t29 | exon | g15457.t29.exon3 | 5520469 | 5520609 |
| chr_4 | g15457 | g15457.t29 | cds | g15457.t29.CDS3 | 5520469 | 5520536 |
| chr_4 | g15457 | g15457.t29 | TSS | g15457.t29 | NA | NA |
Sequences
>g15457.t29 Gene=g15457 Length=646
AAATTATTTTGTATGGAAGCAATTTGGTCAAGATATTTTCCAATTTATAGACAACTTAAA
GCTCGTATTAACAATGGTGATCTTGGTGACATTAAAGAAGTTTATGCTGAATTTGGTGTT
GAAATGGCAGATGTTGATCGTGAAAAATGAACTTGGAGGTGGTTCCACATTGGATATTGG
AACCTATGCAATTCAATTTTCTCAATTTGTCTTTCGTGCTGAACCGACATCAATTAAAGC
AACTGGCAAATTAAATGAAGAAGGTGTTGATACTGAAACTGAAGTTGAATTAAAATATCC
AAATGGTGGTGTTGCTCGTTATAAGACTAATTCAACAAAAGAACTCAGCAACATTGCAAC
TGTAACAGGAAGCAAAGGCACAATGAAGCTCCATACTTTCTGGTGTCCAACTGAATTAGA
AGATGTTGATGGTCAAATGAAAAAATTCGAATTACCACAAAATCGACTTGGTAAATTTAT
TTACTTCCATGGTGCTGGCATGCGATATGAAGCAGAAGAAGTAAGAAGATGCATCAATGA
AGGTTTGACTGAAAGTGAAGATGCAACACATAATGACAGTCTTGTCATTGCTCGTATTCG
TGATGAAATTCGTAGACAACTTGGTGTTAAATTTGATGAAGACTGA
>g15457.t29 Gene=g15457 Length=190
MVILVTLKKFMLNLVLKWQMLIVKNELGGGSTLDIGTYAIQFSQFVFRAEPTSIKATGKL
NEEGVDTETEVELKYPNGGVARYKTNSTKELSNIATVTGSKGTMKLHTFWCPTELEDVDG
QMKKFELPQNRLGKFIYFHGAGMRYEAEEVRRCINEGLTESEDATHNDSLVIARIRDEIR
RQLGVKFDED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15457.t29 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 17 | 190 | 1.1E-43 |
| 2 | g15457.t29 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 22 | 188 | 3.4E-43 |
| 3 | g15457.t29 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 22 | 188 | 3.4E-43 |
| 1 | g15457.t29 | Pfam | PF02894 | Oxidoreductase family, C-terminal alpha/beta domain | 18 | 155 | 2.9E-7 |
| 4 | g15457.t29 | SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 17 | 155 | 4.09E-26 |
| 5 | g15457.t29 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
