General information for g15459.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15459 is located on chr_4: 5525468..5528918 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15459 | g15459.t1 | isoform | g15459.t1 | 5525468 | 5528918 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon1 | 5525468 | 5525553 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS1 | 5525468 | 5525553 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon2 | 5525606 | 5525735 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS2 | 5525606 | 5525735 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon3 | 5525790 | 5525989 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS3 | 5525790 | 5525989 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon4 | 5526043 | 5526576 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS4 | 5526043 | 5526576 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon5 | 5526626 | 5526913 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS5 | 5526626 | 5526913 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon6 | 5526972 | 5527325 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS6 | 5526972 | 5527325 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon7 | 5527377 | 5527503 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS7 | 5527377 | 5527503 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon8 | 5527557 | 5527696 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS8 | 5527557 | 5527696 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon9 | 5527751 | 5527996 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS9 | 5527751 | 5527996 |
| chr_4 | g15459 | g15459.t1 | exon | g15459.t1.exon10 | 5528087 | 5528918 |
| chr_4 | g15459 | g15459.t1 | cds | g15459.t1.CDS10 | 5528087 | 5528918 |
| chr_4 | g15459 | g15459.t1 | TSS | g15459.t1 | NA | NA |
| chr_4 | g15459 | g15459.t1 | TTS | g15459.t1 | NA | NA |
Sequences
>g15459.t1 Gene=g15459 Length=2937
ATGAAGGTTGAAATAGAAAAATATTTTGAATCATCAACAATTCATGGTTTCAAATATTTA
TCAAAGAAATTTCATTGGATTGAAAGAATATTTTGGGTTTTATCACTTTTAGCATCTATA
ACTATCACAATTCTTTTAATCTATAAGCTCATAATAAAAATTCAAAATGTTCCTATCGTT
ATTTCTATCACAGATAATGCAATGTCTATTGCTGATATTGATTTTCCCGGTGTCACTATC
TGTTATAGTTTCAAGCCAACATTTGAATACAACAAATCTCACGAATATTTTTATGATCAT
TTTGCAAATAAAATTAAAAATGTTGATAAGAGAGATAAATTTCAAATTTATTATGTCGAC
ATTTTAAATGCATTTGAAAATAATGAAATTAAATTTGATAAACTGGATATGGAAATGCTT
GAACATTTACAAGTTGTTGATCTTATAACTGATCGAGGTGTATTTGCAACAAAAAATTTA
TCAATTTCTACAGAAAATATTTTCAAGATTATAAAAGAATTTCAAAGATATTATGAAAAA
AGTATTTATTTTCATGATTGGACTGATTTTACTTATGTGTCTGAAAGTGTAATGAAACAT
AAATTGTGTATTACATACAATATTCCACCACACGAAACTGTTTTTAATTTGAAATCAGTT
TCTGATGATTTTTGTTATGAGTATGCTAAGGAAAAGAAAAATTCTACAGTTATCATCCCA
AAAAGAGCAGAAAGCTTTTCACAAAAATTATTGATTAATTCATTGTATGTTGGTTCTAAT
AAAGGTGAAATCAGTAACAGTTTTGAAGGACAATCAATTTCTTTACATGATCCTTATGAA
TTTCCTTCGATATTTTTACAACCTTTTCAATATAACTTCAATATTCGAACAACCATTCAA
CCTCAATTTATAACAATTGATGAATCACTTTATAATACTGATGTTTCAGAACGAAATTGT
TTTCATCCTGATGAGCGTCAATTAAAAATCTTTAAAGTTTATACAAAAAACAATTGCTTA
GTTGAATGCTTGACAGAATTCATGATTCAAAAATGTGATTGCGTAGAATTTTTCATGATT
AGAAATTTTACAACACGAATTTGTTCAGCAAGCGAAAAGAAATGTTTTGACAAAGCTAAG
AGGGAATTTGAAAATCATTTAAATTATTGTAATTGTCTTGATCCATGCACATATGTCAAA
TACATAGGTGAATTTAAAAGGAAAGAATTGGATGAAATAATATTCATAAACAAAAAGGCT
CAACAGAAAATATATGTCACAATATTGAATTATAAATCCATGCAAATCACTGAAATTAAA
AGAAAACTTCAATTTAATGAAATCGATTTTCTCTCATTTGTTGGTGGACTTTTGGGACTT
TTTGCTGGATTTTCTGCTTTATCTTTCATTGAAATTTTATATTGGATGAGTTTAAAATTT
TTGATTTTATTCCGTAGACAAAAAACAGCAATCATTCATCCAATGACTGTTAGTCAAGTG
ATGGAAATAAGAGTTGAAAATCGTTGGAAATATTTAGAAAATTCCTCAATTCATGGCTTT
TCATATTTATACAGCAAAAAATTTTTTGAAATGATAATTTGGTCAATTTTCACTTCAATT
GCTCTAAGTTTATGCTTTGCAATCATTTTGAATTTTCAATATGAATATTCTAATAGTTTT
ACTGTTGGACCTGATGATGCAATGACTTTTCGCGGTCTAATTCCATTTCCAGCTGTCACA
TTAATACCAAGTTATTTTGTTGATGAAAAACTTTTTTATAAATATACCAGAGATGAATAC
ACTGATCAAGAACTGAAATCTATTTTTAAAAATCAAGAATCAAAAATCATTCATTCTAAA
AAATTAGCAAAAATGATAGTTTGTTTTTATAGAGGAGCATTCACGGTTTCTAGAAAAGAT
TTCAAAGTCACAGAATATTATTATAAAATTTTAAATGAAATAGCTCCTGATGAATGGTTT
AAACAGCAATATGCAATTTGGAATGACAAATTTCAAGTGAATTTTTCAAGAAATTTTATT
TATAACAAGGGAATAATTTACACATTTAATATGATGGACTCAAAAAATCTATTAAACTAC
AAAAGTGTTCATGATGATTTTATTTATAAAAACAATATTTCAATGTTGAGACAAAGATCA
ATGCCGAAAATTTCAAATTACTCTATAAAAGTCAGCACAAAATATAATGCAAAATTTCAA
CTTCGTATAAAAGAACAAAAATTTAATGACTCAAATTTGAAACCATGTCGTTACAAATCA
ATTGTGATTCATAAACCTGAAACTTTATTAAGAATAACAACTGACTATGATGAAATTAAG
ATTAATCATTCAATGAATATCGAAATAACACCAAAAATCATTCAAACTGACAAGAGTTTA
CGTAAAATTGATCCATTTGTGAGAGATTGTTATTTCAAAAATGAGAAAAAGTTGAAATAT
TTTAAAATTTATACTGAGCAATTTTGTAAAATGGAATGTTTTGTGACATTTCTCAAAAAA
AAGAATGACTGTCGAGAAGTTTACACAATTTATGAAAATAACGATTCAAGACCTTTTTGT
TTAAGCGTTTCCTCAAAGTTTTTAAAAGATGATTTAGAAAATAATGAAAACTTTTCATTT
AAACAAAAATGTTCATGTTTGCCCACTTGTGATTCAACTGAATATCATGTTAATATTTAC
CCAAGTGATGATGATGCAGATGATAATGAAACATTTATCATCAATGTAAAAATGTATACA
GAAAATATGATTTTATTTCGTCGATATCAACAATTTTCATTTTTTGATGCTGTTTCTTAT
GTTGGTGGTTTGCTTGGACTTTTTGCTGGAATTTCAGTTTTATCAATTGTTGAAATCTTT
TATTTTATTACATTGCGATTGTTTGATGATATTTTGAGATTATTAAAACGAACATAA
>g15459.t1 Gene=g15459 Length=978
MKVEIEKYFESSTIHGFKYLSKKFHWIERIFWVLSLLASITITILLIYKLIIKIQNVPIV
ISITDNAMSIADIDFPGVTICYSFKPTFEYNKSHEYFYDHFANKIKNVDKRDKFQIYYVD
ILNAFENNEIKFDKLDMEMLEHLQVVDLITDRGVFATKNLSISTENIFKIIKEFQRYYEK
SIYFHDWTDFTYVSESVMKHKLCITYNIPPHETVFNLKSVSDDFCYEYAKEKKNSTVIIP
KRAESFSQKLLINSLYVGSNKGEISNSFEGQSISLHDPYEFPSIFLQPFQYNFNIRTTIQ
PQFITIDESLYNTDVSERNCFHPDERQLKIFKVYTKNNCLVECLTEFMIQKCDCVEFFMI
RNFTTRICSASEKKCFDKAKREFENHLNYCNCLDPCTYVKYIGEFKRKELDEIIFINKKA
QQKIYVTILNYKSMQITEIKRKLQFNEIDFLSFVGGLLGLFAGFSALSFIEILYWMSLKF
LILFRRQKTAIIHPMTVSQVMEIRVENRWKYLENSSIHGFSYLYSKKFFEMIIWSIFTSI
ALSLCFAIILNFQYEYSNSFTVGPDDAMTFRGLIPFPAVTLIPSYFVDEKLFYKYTRDEY
TDQELKSIFKNQESKIIHSKKLAKMIVCFYRGAFTVSRKDFKVTEYYYKILNEIAPDEWF
KQQYAIWNDKFQVNFSRNFIYNKGIIYTFNMMDSKNLLNYKSVHDDFIYKNNISMLRQRS
MPKISNYSIKVSTKYNAKFQLRIKEQKFNDSNLKPCRYKSIVIHKPETLLRITTDYDEIK
INHSMNIEITPKIIQTDKSLRKIDPFVRDCYFKNEKKLKYFKIYTEQFCKMECFVTFLKK
KNDCREVYTIYENNDSRPFCLSVSSKFLKDDLENNENFSFKQKCSCLPTCDSTEYHVNIY
PSDDDADDNETFIINVKMYTENMILFRRYQQFSFFDAVSYVGGLLGLFAGISVLSIVEIF
YFITLRLFDDILRLLKRT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g15459.t1 | Gene3D | G3DSA:1.10.287.770 | - | 532 | 960 | 5.1E-17 |
| 12 | g15459.t1 | Gene3D | G3DSA:2.60.470.10 | - | 561 | 930 | 5.1E-17 |
| 13 | g15459.t1 | Gene3D | G3DSA:1.10.3590.10 | - | 585 | 758 | 5.1E-17 |
| 14 | g15459.t1 | Gene3D | G3DSA:1.10.287.820 | - | 802 | 890 | 5.1E-17 |
| 3 | g15459.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 2 | 489 | 1.6E-80 |
| 5 | g15459.t1 | PANTHER | PTHR11690:SF237 | NACH, ISOFORM E-RELATED | 2 | 489 | 1.6E-80 |
| 4 | g15459.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 505 | 971 | 1.6E-80 |
| 6 | g15459.t1 | PANTHER | PTHR11690:SF237 | NACH, ISOFORM E-RELATED | 505 | 971 | 1.6E-80 |
| 2 | g15459.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 8 | 474 | 1.6E-60 |
| 1 | g15459.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 511 | 962 | 1.4E-43 |
| 18 | g15459.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 29 | - |
| 22 | g15459.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 51 | - |
| 19 | g15459.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 52 | 449 | - |
| 23 | g15459.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 450 | 476 | - |
| 17 | g15459.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 477 | 530 | - |
| 25 | g15459.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 531 | 550 | - |
| 21 | g15459.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 551 | 569 | - |
| 26 | g15459.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 570 | 587 | - |
| 16 | g15459.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 588 | 936 | - |
| 24 | g15459.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 937 | 963 | - |
| 20 | g15459.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 964 | 978 | - |
| 11 | g15459.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 52 | - |
| 10 | g15459.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 453 | 475 | - |
| 9 | g15459.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 531 | 553 | - |
| 8 | g15459.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 568 | 587 | - |
| 7 | g15459.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 937 | 959 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed