General information for g15479.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Luciferin 4-monooxygenase.
Parent gene
- The parent gene g15479 is located on chr_4: 5592878..5593676 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15479 | g15479.t1 | TTS | g15479.t1 | 5591571 | 5591571 |
| chr_4 | g15479 | g15479.t1 | isoform | g15479.t1 | 5591728 | 5593676 |
| chr_4 | g15479 | g15479.t1 | exon | g15479.t1.exon1 | 5591728 | 5592032 |
| chr_4 | g15479 | g15479.t1 | cds | g15479.t1.CDS1 | 5591728 | 5592032 |
| chr_4 | g15479 | g15479.t1 | exon | g15479.t1.exon2 | 5592095 | 5592396 |
| chr_4 | g15479 | g15479.t1 | cds | g15479.t1.CDS2 | 5592095 | 5592396 |
| chr_4 | g15479 | g15479.t1 | exon | g15479.t1.exon3 | 5592510 | 5593215 |
| chr_4 | g15479 | g15479.t1 | cds | g15479.t1.CDS3 | 5592510 | 5593215 |
| chr_4 | g15479 | g15479.t1 | exon | g15479.t1.exon4 | 5593270 | 5593477 |
| chr_4 | g15479 | g15479.t1 | cds | g15479.t1.CDS4 | 5593270 | 5593477 |
| chr_4 | g15479 | g15479.t1 | exon | g15479.t1.exon5 | 5593536 | 5593676 |
| chr_4 | g15479 | g15479.t1 | cds | g15479.t1.CDS5 | 5593536 | 5593676 |
| chr_4 | g15479 | g15479.t1 | TSS | g15479.t1 | 5593742 | 5593742 |
Sequences
>g15479.t1 Gene=g15479 Length=1662
ATGCAGTGTGAAGACAATCCAAATATAATTTATGGTGGTGATGTTGAAGATGCATATGAA
GAAGGAGAAAAAAGAAATTTTGAATCACTTGGTCAGATGATTTTGGAAAATTTAGCATTG
GGAAATAATAGACCTTTATTTATTAATGGTGCAACCGATGAAACCATAACTTTTAATGAT
GTAAGAAAAAACACAATAACATTTGCAAAAGCTTTACATGGTTTTGGTATAAAAGAAAAT
GATACTGTTGCAATTATAAGTGAAAATCGACTTGAATTTCCATCAATATCTTATGGTGCT
ATTTGTTTGAACGCTATTGTAGCACCAATAAATAGCAGCTATACTGAAAGAGAACTCAAG
CATGCTCTTAACTTATCAAAGCCAAAGATTATTTTTACTTCAAAATTGACATCACAAAAA
ATAATTGCAGTCTGCAAGGAGCTTAAATTTATCCAAAAAGTAATTTTAATTGACAACAAT
GATCAAAAAAGTGAAAATTCACTCACAATTGGTGAATTTGTCAAAAAATATGAAGACAAA
AATTTCAATGTTGAAAATTTTGTTGCTAAAAAAGTTGACACAGAAAATCTTACAACTTTA
ATTTTACTATCAAGCGGCACAACAGGTTTAGCAAAAGCAGTTGAGATAACTCAATTAAAT
ATTATGTCAACTATAGACAGTGCTAAAGTAATGTTTGAAGTCATGAAAATGCTTTATGAA
AAAGATGTAGTTTATTTCAATATCGCACCATGGTTTCACACACTTGGTTACATTTCAATG
TGTCTTCTTGCTTGCTCAAGTTCATCTGTTTTTATTTTTCTTCCTAAATTTGAAGAAAGA
ACATTTTTACGAGCAATTGAAAAATATAAAGTCAATGTATTGACAGTTGTACCACCAATT
ATGTTGTTACTTGCAAAAAGTCCTTTAGTAGATGAATATGACTTATCAAGTATTTTAGAA
ATTGGATGTGGAGCTGCACATCTTTCTTCTGAAGTTGAGGAACAAGTTAGAAATCGTTTA
AAAAATGTTACAGTTAGACAAGGATATGGATTAAGTGAAGCAACTTACTCCACATTAGGA
GCAAGTGTTCTCGTAAAACCAGGTTCCGTAGGACAACCAGTAAGAGGAATTTATGCAAAA
ATTGTTGATGAAAATAATGTTGCATTAGGACCAAATAAAGTTGGTGAACTTTGTTTCAAA
GGTCCAAGAATTATGAAAGGTTACAAAAGTAATAAATTAGCAACAAATGAAATGATTGAT
AAAGATGGTTGGTTGCATACTGGTGATTTGGGATATTACGATGAAGATTTTCAATTTTAC
ATTGTTGATCGATTGAAAGAATTGATTAAATACAAAGGTTTTCAAGTTGCTCCAGCCGAA
CTTGAAGGGCTTTTGCTGTCAAATCCTAAAATTAAAGATGCTGGTGTTATTGGAATTCCT
GATGATTTTGCTGGTGAACTTCCATTCGCATTTATTGTTAAACAAGAAAATGTTGAATTA
TCAGAGCAAGAAGTGAAAAATTTTGTTAAGGAAAATGCAAGCAATGTTAAATGGTTGAGA
GGTGGAGTAAAATTCATTGATGAAATACCAAAAACTCAAAGTGGCAAAATATTGAGACGA
GAATTGAAAGATTTATACAAGAGTACAAAATCAAAATTGTAA
>g15479.t1 Gene=g15479 Length=553
MQCEDNPNIIYGGDVEDAYEEGEKRNFESLGQMILENLALGNNRPLFINGATDETITFND
VRKNTITFAKALHGFGIKENDTVAIISENRLEFPSISYGAICLNAIVAPINSSYTERELK
HALNLSKPKIIFTSKLTSQKIIAVCKELKFIQKVILIDNNDQKSENSLTIGEFVKKYEDK
NFNVENFVAKKVDTENLTTLILLSSGTTGLAKAVEITQLNIMSTIDSAKVMFEVMKMLYE
KDVVYFNIAPWFHTLGYISMCLLACSSSSVFIFLPKFEERTFLRAIEKYKVNVLTVVPPI
MLLLAKSPLVDEYDLSSILEIGCGAAHLSSEVEEQVRNRLKNVTVRQGYGLSEATYSTLG
ASVLVKPGSVGQPVRGIYAKIVDENNVALGPNKVGELCFKGPRIMKGYKSNKLATNEMID
KDGWLHTGDLGYYDEDFQFYIVDRLKELIKYKGFQVAPAELEGLLLSNPKIKDAGVIGIP
DDFAGELPFAFIVKQENVELSEQEVKNFVKENASNVKWLRGGVKFIDEIPKTQSGKILRR
ELKDLYKSTKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15479.t1 | Gene3D | G3DSA:3.40.50.980 | - | 54 | 366 | 7.0E-116 |
| 7 | g15479.t1 | Gene3D | G3DSA:3.40.50.980 | - | 58 | 217 | 7.0E-116 |
| 10 | g15479.t1 | Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 367 | 444 | 7.0E-116 |
| 9 | g15479.t1 | Gene3D | G3DSA:3.30.300.30 | - | 445 | 552 | 2.4E-29 |
| 3 | g15479.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 28 | 552 | 7.4E-161 |
| 4 | g15479.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 28 | 552 | 7.4E-161 |
| 2 | g15479.t1 | Pfam | PF00501 | AMP-binding enzyme | 43 | 451 | 2.3E-84 |
| 1 | g15479.t1 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 460 | 536 | 9.9E-14 |
| 12 | g15479.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 250 | - |
| 13 | g15479.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 251 | 274 | - |
| 11 | g15479.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 275 | 553 | - |
| 6 | g15479.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 201 | 212 | - |
| 5 | g15479.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 27 | 548 | 3.14E-120 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
