General information for g15479.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Luciferin 4-monooxygenase.
Parent gene
- The parent gene g15479 is located on chr_4: 5592878..5593676 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15479 | g15479.t2 | TTS | g15479.t2 | 5591571 | 5591571 |
| chr_4 | g15479 | g15479.t2 | isoform | g15479.t2 | 5591728 | 5593676 |
| chr_4 | g15479 | g15479.t2 | exon | g15479.t2.exon1 | 5591728 | 5592032 |
| chr_4 | g15479 | g15479.t2 | cds | g15479.t2.CDS1 | 5591728 | 5592032 |
| chr_4 | g15479 | g15479.t2 | exon | g15479.t2.exon2 | 5592095 | 5592396 |
| chr_4 | g15479 | g15479.t2 | cds | g15479.t2.CDS2 | 5592095 | 5592396 |
| chr_4 | g15479 | g15479.t2 | exon | g15479.t2.exon3 | 5592510 | 5593215 |
| chr_4 | g15479 | g15479.t2 | cds | g15479.t2.CDS3 | 5592510 | 5592874 |
| chr_4 | g15479 | g15479.t2 | exon | g15479.t2.exon4 | 5593270 | 5593676 |
| chr_4 | g15479 | g15479.t2 | TSS | g15479.t2 | 5593742 | 5593742 |
Sequences
>g15479.t2 Gene=g15479 Length=1720
ATGCAGTGTGAAGACAATCCAAATATAATTTATGGTGGTGATGTTGAAGATGCATATGAA
GAAGGAGAAAAAAGAAATTTTGAATCACTTGGTCAGATGATTTTGGAAAATTTAGCATTG
GGAAATAATAGACCTTTATTTGTAAGATGATTTAGCACTTTTTAATCAATTTCATTACAA
AATTTAAAAAATATTTTAGATTAATGGTGCAACCGATGAAACCATAACTTTTAATGATGT
AAGAAAAAACACAATAACATTTGCAAAAGCTTTACATGGTTTTGGTATAAAAGAAAATGA
TACTGTTGCAATTATAAGTGAAAATCGACTTGAATTTCCATCAATATCTTATGGTGCTAT
TTGTTTGAACGCTATTGTAGCACCAATAAATAGCAGCTATACTGAAAGAGAACTCAAGCA
TGCTCTTAACTTATCAAAGCCAAAGATTATTTTTACTTCAAAATTGACATCACAAAAAAT
AATTGCAGTCTGCAAGGAGCTTAAATTTATCCAAAAAGTAATTTTAATTGACAACAATGA
TCAAAAAAGTGAAAATTCACTCACAATTGGTGAATTTGTCAAAAAATATGAAGACAAAAA
TTTCAATGTTGAAAATTTTGTTGCTAAAAAAGTTGACACAGAAAATCTTACAACTTTAAT
TTTACTATCAAGCGGCACAACAGGTTTAGCAAAAGCAGTTGAGATAACTCAATTAAATAT
TATGTCAACTATAGACAGTGCTAAAGTAATGTTTGAAGTCATGAAAATGCTTTATGAAAA
AGATGTAGTTTATTTCAATATCGCACCATGGTTTCACACACTTGGTTACATTTCAATGTG
TCTTCTTGCTTGCTCAAGTTCATCTGTTTTTATTTTTCTTCCTAAATTTGAAGAAAGAAC
ATTTTTACGAGCAATTGAAAAATATAAAGTCAATGTATTGACAGTTGTACCACCAATTAT
GTTGTTACTTGCAAAAAGTCCTTTAGTAGATGAATATGACTTATCAAGTATTTTAGAAAT
TGGATGTGGAGCTGCACATCTTTCTTCTGAAGTTGAGGAACAAGTTAGAAATCGTTTAAA
AAATGTTACAGTTAGACAAGGATATGGATTAAGTGAAGCAACTTACTCCACATTAGGAGC
AAGTGTTCTCGTAAAACCAGGTTCCGTAGGACAACCAGTAAGAGGAATTTATGCAAAAAT
TGTTGATGAAAATAATGTTGCATTAGGACCAAATAAAGTTGGTGAACTTTGTTTCAAAGG
TCCAAGAATTATGAAAGGTTACAAAAGTAATAAATTAGCAACAAATGAAATGATTGATAA
AGATGGTTGGTTGCATACTGGTGATTTGGGATATTACGATGAAGATTTTCAATTTTACAT
TGTTGATCGATTGAAAGAATTGATTAAATACAAAGGTTTTCAAGTTGCTCCAGCCGAACT
TGAAGGGCTTTTGCTGTCAAATCCTAAAATTAAAGATGCTGGTGTTATTGGAATTCCTGA
TGATTTTGCTGGTGAACTTCCATTCGCATTTATTGTTAAACAAGAAAATGTTGAATTATC
AGAGCAAGAAGTGAAAAATTTTGTTAAGGAAAATGCAAGCAATGTTAAATGGTTGAGAGG
TGGAGTAAAATTCATTGATGAAATACCAAAAACTCAAAGTGGCAAAATATTGAGACGAGA
ATTGAAAGATTTATACAAGAGTACAAAATCAAAATTGTAA
>g15479.t2 Gene=g15479 Length=323
MFEVMKMLYEKDVVYFNIAPWFHTLGYISMCLLACSSSSVFIFLPKFEERTFLRAIEKYK
VNVLTVVPPIMLLLAKSPLVDEYDLSSILEIGCGAAHLSSEVEEQVRNRLKNVTVRQGYG
LSEATYSTLGASVLVKPGSVGQPVRGIYAKIVDENNVALGPNKVGELCFKGPRIMKGYKS
NKLATNEMIDKDGWLHTGDLGYYDEDFQFYIVDRLKELIKYKGFQVAPAELEGLLLSNPK
IKDAGVIGIPDDFAGELPFAFIVKQENVELSEQEVKNFVKENASNVKWLRGGVKFIDEIP
KTQSGKILRRELKDLYKSTKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g15479.t2 | Gene3D | G3DSA:3.40.50.980 | - | 2 | 128 | 8.8E-40 |
| 9 | g15479.t2 | Gene3D | G3DSA:2.30.38.10 | Luciferase; Domain 3 | 129 | 214 | 2.0E-29 |
| 8 | g15479.t2 | Gene3D | G3DSA:3.30.300.30 | - | 215 | 322 | 9.1E-30 |
| 3 | g15479.t2 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 9 | 322 | 9.1E-115 |
| 4 | g15479.t2 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 9 | 322 | 9.1E-115 |
| 2 | g15479.t2 | Pfam | PF00501 | AMP-binding enzyme | 11 | 221 | 1.1E-49 |
| 1 | g15479.t2 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 230 | 306 | 4.2E-14 |
| 11 | g15479.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 12 | g15479.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 44 | - |
| 10 | g15479.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 45 | 323 | - |
| 6 | g15479.t2 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 11 | 318 | 1.31E-85 |
| 5 | g15479.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
