General information for g15485.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15485 is located on chr_4: 5611152..5612402 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15485 | g15485.t12 | TSS | g15485.t12 | 5611121 | 5611121 |
| chr_4 | g15485 | g15485.t12 | isoform | g15485.t12 | 5611152 | 5612402 |
| chr_4 | g15485 | g15485.t12 | exon | g15485.t12.exon1 | 5611152 | 5612015 |
| chr_4 | g15485 | g15485.t12 | cds | g15485.t12.CDS1 | 5611835 | 5612015 |
| chr_4 | g15485 | g15485.t12 | exon | g15485.t12.exon2 | 5612178 | 5612252 |
| chr_4 | g15485 | g15485.t12 | cds | g15485.t12.CDS2 | 5612178 | 5612252 |
| chr_4 | g15485 | g15485.t12 | exon | g15485.t12.exon3 | 5612311 | 5612402 |
| chr_4 | g15485 | g15485.t12 | cds | g15485.t12.CDS3 | 5612311 | 5612402 |
| chr_4 | g15485 | g15485.t12 | TTS | g15485.t12 | 5612514 | 5612514 |
Sequences
>g15485.t12 Gene=g15485 Length=1031
ATGAAATTATTTATTTTTTTAATTTTTTCTATAAGTTCTGCACTTTGTCTTGTGCCAGTG
AAAGAAGGATGGAAATTAGTAAAATCACCTTTAGATAGTCCACATTTTCATGACGTTATG
GAAAAAATTTATTCAAATATTCCTGCAGCAAAACCAAATGTAAGAAGTGGAAGAATTGCT
GGTGGTGAACTTGCTTCTCTTGGTCAATTTCCTCATCTTGTGCTGCTTTACAATGTTGAT
AAATTTGGTGACACTTATATTTGTGGAAGCAGCATTATTAGTCATAATTGGTTACTTACT
GCCGGTATGGAAAAAATATACAATTGATTTCTTAAAACTTTATCTTTTAAATCAAAAGTT
TTTCATTTTTCCAACATTTTTAATATAAAATGTTAAAATTTTAAAATCACGAATTTATTT
TAATTTTCCTCAAAGGTCATTGCCTCCATGAAATTTCTTATACAACAGTTTATGCTGGAA
TTATTAATAGAATACTTGGGCCAGCAGTTTGGTCACGAGAAGTCACAGCTGCGTCGGGAA
ATTTCATTTTCCATGAAGAATACAAAGGAGTACAAAATGACATCGCTTTAATTCGACTTG
TTACTTCAATTCCAAGTCATCCACATGTTGGAAATATTGCATTACCACGAAGAAGTGATG
CAAGTGTTGTTCTTGATGGAAAAATGGCAACAGTTGCAGGATTTGGAAGAATAAATGATG
TTCAAATGCAACCATCAGAACATTTAAGATTTATGTCACAACCAATTTATCCAAATAGTA
AATGTGAAACGGTTTTTGGTAAAGTTAATGTTAGAGATACAAATTTATGCTTAAGTGGTG
CAAATGGAAAATCAACATGTCAAGGTGGACCATTGGTAACTGAAATTGCGCCTGGAAGAA
ATGTTTTAGTAGGAATTGTTAGTTTTGGTGCCGAATCAGGTTGCACTTTAGGACATCCAC
TAGTGTTCACACGTGTGGCTTCTTATCTTGATTGGATTGAAAAGATAACCGGCATTTATA
TTTACGATTGA
>g15485.t12 Gene=g15485 Length=115
MATVAGFGRINDVQMQPSEHLRFMSQPIYPNSKCETVFGKVNVRDTNLCLSGANGKSTCQ
GGPLVTEIAPGRNVLVGIVSFGAESGCTLGHPLVFTRVASYLDWIEKITGIYIYD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15485.t12 | Gene3D | G3DSA:2.40.10.10 | - | 1 | 108 | 0.000 |
| 2 | g15485.t12 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 2 | 109 | 0.000 |
| 3 | g15485.t12 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 2 | 109 | 0.000 |
| 1 | g15485.t12 | Pfam | PF00089 | Trypsin | 2 | 105 | 0.000 |
| 6 | g15485.t12 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 110 | 11.039 |
| 4 | g15485.t12 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 2 | 112 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed