Gene loci information

Transcript annotation

  • This transcript has been annotated as Glycerol kinase 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15492 g15492.t2 TTS g15492.t2 5624967 5624967
chr_4 g15492 g15492.t2 isoform g15492.t2 5625025 5626068
chr_4 g15492 g15492.t2 exon g15492.t2.exon1 5625025 5625354
chr_4 g15492 g15492.t2 cds g15492.t2.CDS1 5625025 5625354
chr_4 g15492 g15492.t2 exon g15492.t2.exon2 5625433 5626068
chr_4 g15492 g15492.t2 cds g15492.t2.CDS2 5625433 5626062
chr_4 g15492 g15492.t2 TSS g15492.t2 NA NA

Sequences

>g15492.t2 Gene=g15492 Length=966
GATCGTATGCATGTGACTGATGTGACAAATGCAAGTCGAACCATGCTTATGAATCTTGAA
ACACTCGAGTGGGATCCAATTTTAAAGAAATTTTTTGACATTCCTGATTGCATTGAATTA
CCAACGATAAAATCGAGTTCAGAAATTTATGGAAATATTGTTGATGGTTCTTTGAAAGGA
ATTCCAATTGCTGGATGTTTGGGTGATCAACAAGCAGCTTTAGTAGGTCAAGGTTGCATG
CAAATTGGTGAGGCAAAATGTACTTATGGCACTGGCTGCTTTTTACTTTATTGTACTGGA
AATCACAATGTTGATTCTGAGCATGGATTGTTGACTACAGTTGCTTATCAACTTGGTGAT
AGACATCCAGTTTATGCACTTGAAGGTTCAGTTGCTGTCGCTGGTGCTGCTTTGACTTGG
TTAAAAGATAACATTGAATTGATGCATGATTTTGATGAAATTGATGGACTTGTAAAATCA
GTGAAGGACAATGGTGATGTTTATTTTGTTCCAGCCTTTTCTGGATTGTTTGCACCTCAT
TGGGATGCTGAAGCAAGAGGAATTATTTGTGGAATAACTGAAGAAACACAGAGAGGACAT
ATTGTTAGAGCTGCTTTGGAAAGTGTTTGCTTTCAGGTCAAAGACATTCTTGATGCAATG
AACCTCGAATGCGGCACACCATTATCAAAGCTCAAAGTTGATGGTGGAATGACAAATAAT
AATTTTTTGATGCAAACACAAACTGATATAATTGGATTAGAGGTCATCAAGCCAGCAATG
ATTGAAACAACAAGTTTGGGAGCAGCAATGGTTGCTGGTGCTGCTGTTGGTTTATGGAAC
ATGGACTTGAAAGTTGAAAGCAACTCGAGAAATTTCAAACCAAAAATTAGCGATTATGAA
AGGGAAAATTGTTTCACGAAGTGGAAAATGGCAATTGAAAGAAGTCTTGGATGGGATCAG
AGTTAG

>g15492.t2 Gene=g15492 Length=319
MHVTDVTNASRTMLMNLETLEWDPILKKFFDIPDCIELPTIKSSSEIYGNIVDGSLKGIP
IAGCLGDQQAALVGQGCMQIGEAKCTYGTGCFLLYCTGNHNVDSEHGLLTTVAYQLGDRH
PVYALEGSVAVAGAALTWLKDNIELMHDFDEIDGLVKSVKDNGDVYFVPAFSGLFAPHWD
AEARGIICGITEETQRGHIVRAALESVCFQVKDILDAMNLECGTPLSKLKVDGGMTNNNF
LMQTQTDIIGLEVIKPAMIETTSLGAAMVAGAAVGLWNMDLKVESNSRNFKPKISDYERE
NCFTKWKMAIERSLGWDQS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g15492.t2 Gene3D G3DSA:3.30.420.40 - 1 75 2.3E-24
8 g15492.t2 Gene3D G3DSA:3.30.420.40 - 76 319 1.9E-85
3 g15492.t2 PANTHER PTHR10196 SUGAR KINASE 1 317 3.5E-150
4 g15492.t2 PANTHER PTHR10196:SF82 GH12641P 1 317 3.5E-150
2 g15492.t2 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 2 74 2.1E-18
1 g15492.t2 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 83 273 6.3E-61
7 g15492.t2 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 185 205 -
5 g15492.t2 SUPERFAMILY SSF53067 Actin-like ATPase domain 2 77 5.7E-17
6 g15492.t2 SUPERFAMILY SSF53067 Actin-like ATPase domain 76 316 4.32E-71

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values