General information for g15492.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glycerol kinase.
Parent gene
- The parent gene g15492 is located on chr_4: 5626132..5627966 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15492 | g15492.t3 | isoform | g15492.t3 | 5626132 | 5627966 |
| chr_4 | g15492 | g15492.t3 | exon | g15492.t3.exon1 | 5626132 | 5626586 |
| chr_4 | g15492 | g15492.t3 | cds | g15492.t3.CDS1 | 5626132 | 5626586 |
| chr_4 | g15492 | g15492.t3 | exon | g15492.t3.exon2 | 5627036 | 5627099 |
| chr_4 | g15492 | g15492.t3 | cds | g15492.t3.CDS2 | 5627036 | 5627081 |
| chr_4 | g15492 | g15492.t3 | exon | g15492.t3.exon3 | 5627454 | 5627966 |
| chr_4 | g15492 | g15492.t3 | TSS | g15492.t3 | NA | NA |
| chr_4 | g15492 | g15492.t3 | TTS | g15492.t3 | NA | NA |
Sequences
>g15492.t3 Gene=g15492 Length=1032
TTGTTTTTGATGACCAATTGAGGAAAATTTTGAGATAAAAGTACACGTAATTTAAAATTT
GGCTCTTGAGTGTTTTTGCTTTTGTAAACAATTTTCAGGGCGATGATTTGTGTGGATGAA
CTGAAATGAAATGAAATTTGATTTTGTTTATTTTTATTTGATGAATAGTTTTTAGTATGT
GATAAGAAGAAGAAAAAGAATTTGGTTTTATTTTGTAGAAAATTTTGAATTAAAATTTTA
TGTGATTTTTAATTTTGTGAAATATTTTTATTTTAAAATTTATTAAAAATTTATTTAAAG
TAGAGACTTAATAATAAATTCATTTATTTCTTTTGATTTTTGATAATAAAATAATTTTAA
AGAAAGAAATTTTAAATCTTCAAAGTTGTTTGTTTATTTGTTTATTTTTTGAATTTAATG
TAATAAAAATCAATTAAAATGTCAACAGTTGAAGGTTTCACCTATCTAGTCGACTATAAA
GAAATATAAATGAAATCTTAATGAAGATCAAAGGAAATAAAATAAACTAAAATGAGCAGC
AGTAAATTTGGAAATTTAATTGGAGCAATTGATGAAGGAACAAGTTCAGCACGTTTCATA
ATTTTCAAAGCTGAAACAACAGAAATTGTAACATCGCATCAAAAGTCAGTAACCAACATT
TTTCCACGAGAAGGTTGGTATGAGCAAGATCCACTTGAAATCATTAGTGTCGTAAAGGAA
TGCATAGAGAAAGCAGTTGAAAAATTAATTGCTCTTGGTGGTTCAGCATCAGACATTAAA
GCTGTTGGAATTACAAATCAACGTGAAAGTACAGTAGTTTGGGATCCTGAAACAGGCGAG
CCTTTTTATAATTGCATAATATGGAGTGACATTCGGACAACTTCAACTGTCGATCAATTG
CTTGAAAAAGTGCCCAACAAAACTCGCAACAAAAATTACCTCAAACCACTTTGTGGTCTT
CCATTGTCGACTTATTTTTCAGCTGTAAAGCTAAAATGGCTCTTGGACAATGCACAGTCA
GTACAAGCAGCT
>g15492.t3 Gene=g15492 Length=167
MSSSKFGNLIGAIDEGTSSARFIIFKAETTEIVTSHQKSVTNIFPREGWYEQDPLEIISV
VKECIEKAVEKLIALGGSASDIKAVGITNQRESTVVWDPETGEPFYNCIIWSDIRTTSTV
DQLLEKVPNKTRNKNYLKPLCGLPLSTYFSAVKLKWLLDNAQSVQAA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15492.t3 | Gene3D | G3DSA:3.30.420.40 | - | 3 | 167 | 1.6E-54 |
| 2 | g15492.t3 | PANTHER | PTHR10196 | SUGAR KINASE | 3 | 167 | 1.5E-79 |
| 3 | g15492.t3 | PANTHER | PTHR10196:SF82 | GH12641P | 3 | 167 | 1.5E-79 |
| 1 | g15492.t3 | Pfam | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain | 10 | 166 | 4.5E-40 |
| 5 | g15492.t3 | ProSitePatterns | PS00933 | FGGY family of carbohydrate kinases signature 1. | 148 | 160 | - |
| 4 | g15492.t3 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 10 | 165 | 1.76E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
