Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sulfotransferase 1A2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15494 g15494.t1 TSS g15494.t1 5630084 5630084
chr_4 g15494 g15494.t1 isoform g15494.t1 5630191 5631373
chr_4 g15494 g15494.t1 exon g15494.t1.exon1 5630191 5630394
chr_4 g15494 g15494.t1 cds g15494.t1.CDS1 5630191 5630394
chr_4 g15494 g15494.t1 exon g15494.t1.exon2 5630450 5630553
chr_4 g15494 g15494.t1 cds g15494.t1.CDS2 5630450 5630553
chr_4 g15494 g15494.t1 exon g15494.t1.exon3 5630679 5630814
chr_4 g15494 g15494.t1 cds g15494.t1.CDS3 5630679 5630814
chr_4 g15494 g15494.t1 exon g15494.t1.exon4 5630870 5631373
chr_4 g15494 g15494.t1 cds g15494.t1.CDS4 5630870 5631373
chr_4 g15494 g15494.t1 TTS g15494.t1 NA NA

Sequences

>g15494.t1 Gene=g15494 Length=948
ATGCTAAAAGTCGAGAACTTTAATGACGAAATTAGTAAAAAAGTTGAAACTCCTGAATTA
AAAAATTATGTAAAAATTTCAATCGAAAACGATGAAAAGAATTTTTGTGTGCTTACTAAA
AAGTTTGTGGATACAAATTATTTGAACCGACTAAGAGATTTCAAAGTTCATGATGACGAT
GTTTGGGTGATAAGTTATCCAAAGTGTGGAACAACATGGGGTGTAGAAATGATTTGGCTT
TTAATAAATGACCTCAACTTTGAAAAAGCTAAAAAAATTCATCAAAATGATCGTGTTCCA
TTTATAGAACGTGGTGGAATTTTTACTTCTATAAATAGTGATTCAATAAAAATTACTGAA
AACTTGAAACGACCAAGAGTTATTAAATCTCATTTATCATCATTTTTGTTACCACGTGAG
CTATTTGCTAATACTAAAGCAAAGATAATTTACATAGCTAGAAATCCGAAAGATGCAGCA
ATTTCTTTTTTCCATCATTATCGCCATTTGGAAGGATATGATGGATCAAAGGAAGATTTT
CTTAATGCATTCTTAAATAACAGAACTTTATTTGCACCAATCAATGAAAAAACATTAGAA
TTTTGGAAATTATCAAAAATTAATTCAAATGTTTTGTTTATTTTTTACGAAGACATGAAG
AAAAATTTGCAGAACGAAACTGAAAAAGTGATGAAGTTTTTGAACAAAAATTATCCAAAA
TCGGAAATTGAGGAACTTTGTGAGCATCTTTCATTTGGGTCAATGAGAAGAAATCCCCAA
TGTAATTTTGAAGTCATAAATAAATCAGATGATGAAAATTTCCAATTCATCAGAAAAGGC
GAAACTGGATCTTACAAGAAAGAAATGAATTCTGAAGAAAATGAAAAATTTGATGATTTT
ATTATGAATGAAGATTTTAAGTTTAATGATTTTGAATACAAATTTTGA

>g15494.t1 Gene=g15494 Length=315
MLKVENFNDEISKKVETPELKNYVKISIENDEKNFCVLTKKFVDTNYLNRLRDFKVHDDD
VWVISYPKCGTTWGVEMIWLLINDLNFEKAKKIHQNDRVPFIERGGIFTSINSDSIKITE
NLKRPRVIKSHLSSFLLPRELFANTKAKIIYIARNPKDAAISFFHHYRHLEGYDGSKEDF
LNAFLNNRTLFAPINEKTLEFWKLSKINSNVLFIFYEDMKKNLQNETEKVMKFLNKNYPK
SEIEELCEHLSFGSMRRNPQCNFEVINKSDDENFQFIRKGETGSYKKEMNSEENEKFDDF
IMNEDFKFNDFEYKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g15494.t1 Coils Coil Coil 216 236 -
5 g15494.t1 Gene3D G3DSA:3.40.50.300 - 2 313 1.2E-80
2 g15494.t1 PANTHER PTHR11783 SULFOTRANSFERASE SULT 16 303 2.7E-86
3 g15494.t1 PANTHER PTHR11783:SF180 GH11818P-RELATED 16 303 2.7E-86
1 g15494.t1 Pfam PF00685 Sulfotransferase domain 58 301 3.7E-56
4 g15494.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 36 301 6.07E-70

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008146 sulfotransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed