General information for g15494.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sulfotransferase 1A2.
Parent gene
- The parent gene g15494 is located on chr_4: 5630191..5631373 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15494 | g15494.t2 | TSS | g15494.t2 | 5630084 | 5630084 |
| chr_4 | g15494 | g15494.t2 | isoform | g15494.t2 | 5630191 | 5631373 |
| chr_4 | g15494 | g15494.t2 | exon | g15494.t2.exon1 | 5630191 | 5630394 |
| chr_4 | g15494 | g15494.t2 | exon | g15494.t2.exon2 | 5630448 | 5630553 |
| chr_4 | g15494 | g15494.t2 | cds | g15494.t2.CDS1 | 5630474 | 5630553 |
| chr_4 | g15494 | g15494.t2 | exon | g15494.t2.exon3 | 5630679 | 5630814 |
| chr_4 | g15494 | g15494.t2 | cds | g15494.t2.CDS2 | 5630679 | 5630814 |
| chr_4 | g15494 | g15494.t2 | exon | g15494.t2.exon4 | 5630870 | 5631373 |
| chr_4 | g15494 | g15494.t2 | cds | g15494.t2.CDS3 | 5630870 | 5631373 |
| chr_4 | g15494 | g15494.t2 | TTS | g15494.t2 | NA | NA |
Sequences
>g15494.t2 Gene=g15494 Length=950
ATGCTAAAAGTCGAGAACTTTAATGACGAAATTAGTAAAAAAGTTGAAACTCCTGAATTA
AAAAATTATGTAAAAATTTCAATCGAAAACGATGAAAAGAATTTTTGTGTGCTTACTAAA
AAGTTTGTGGATACAAATTATTTGAACCGACTAAGAGATTTCAAAGTTCATGATGACGAT
GTTTGGGTGATAAGTTATCCAAAGAGTGTGGAACAACATGGGGTGTAGAAATGATTTGGC
TTTTAATAAATGACCTCAACTTTGAAAAAGCTAAAAAAATTCATCAAAATGATCGTGTTC
CATTTATAGAACGTGGTGGAATTTTTACTTCTATAAATAGTGATTCAATAAAAATTACTG
AAAACTTGAAACGACCAAGAGTTATTAAATCTCATTTATCATCATTTTTGTTACCACGTG
AGCTATTTGCTAATACTAAAGCAAAGATAATTTACATAGCTAGAAATCCGAAAGATGCAG
CAATTTCTTTTTTCCATCATTATCGCCATTTGGAAGGATATGATGGATCAAAGGAAGATT
TTCTTAATGCATTCTTAAATAACAGAACTTTATTTGCACCAATCAATGAAAAAACATTAG
AATTTTGGAAATTATCAAAAATTAATTCAAATGTTTTGTTTATTTTTTACGAAGACATGA
AGAAAAATTTGCAGAACGAAACTGAAAAAGTGATGAAGTTTTTGAACAAAAATTATCCAA
AATCGGAAATTGAGGAACTTTGTGAGCATCTTTCATTTGGGTCAATGAGAAGAAATCCCC
AATGTAATTTTGAAGTCATAAATAAATCAGATGATGAAAATTTCCAATTCATCAGAAAAG
GCGAAACTGGATCTTACAAGAAAGAAATGAATTCTGAAGAAAATGAAAAATTTGATGATT
TTATTATGAATGAAGATTTTAAGTTTAATGATTTTGAATACAAATTTTGA
>g15494.t2 Gene=g15494 Length=239
MIWLLINDLNFEKAKKIHQNDRVPFIERGGIFTSINSDSIKITENLKRPRVIKSHLSSFL
LPRELFANTKAKIIYIARNPKDAAISFFHHYRHLEGYDGSKEDFLNAFLNNRTLFAPINE
KTLEFWKLSKINSNVLFIFYEDMKKNLQNETEKVMKFLNKNYPKSEIEELCEHLSFGSMR
RNPQCNFEVINKSDDENFQFIRKGETGSYKKEMNSEENEKFDDFIMNEDFKFNDFEYKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15494.t2 | Coils | Coil | Coil | 140 | 160 | - |
| 5 | g15494.t2 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 237 | 1.3E-62 |
| 2 | g15494.t2 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 1 | 227 | 3.6E-66 |
| 3 | g15494.t2 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 1 | 227 | 3.6E-66 |
| 1 | g15494.t2 | Pfam | PF00685 | Sulfotransferase domain | 1 | 225 | 2.9E-45 |
| 4 | g15494.t2 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 225 | 1.56E-53 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed