Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g155 g155.t2 isoform g155.t2 1416897 1418682
chr_3 g155 g155.t2 exon g155.t2.exon1 1416897 1416956
chr_3 g155 g155.t2 cds g155.t2.CDS1 1416899 1416956
chr_3 g155 g155.t2 exon g155.t2.exon2 1417852 1418045
chr_3 g155 g155.t2 cds g155.t2.CDS2 1417852 1418045
chr_3 g155 g155.t2 exon g155.t2.exon3 1418114 1418281
chr_3 g155 g155.t2 cds g155.t2.CDS3 1418114 1418281
chr_3 g155 g155.t2 exon g155.t2.exon4 1418368 1418682
chr_3 g155 g155.t2 cds g155.t2.CDS4 1418368 1418583
chr_3 g155 g155.t2 TSS g155.t2 NA NA
chr_3 g155 g155.t2 TTS g155.t2 NA NA

Sequences

>g155.t2 Gene=g155 Length=737
GGCAGCATCAGTTATGCATCAAAGAGTCCTTGGATATTTGCTGGAAGCATCAGAGAGAAC
ATAACTTTTACAGAGCAATTCGATGTCGAGAGATACTCGATGATATTGAAGCTTTTTGAA
ATTGAAAAAGAAATTCAAGCTCTGCCAAATGGCGATGATACTTTAGTTGACGAGTTTTGC
TTGAGTGACAGCTTTAAGATGCGAATACATCTCGCCAGATGTTTGTATAGAAATGCCGAT
ATTTACGTTATTGACAATTGCTTTTCAGATATAGCAACAAATCAAGTTGCAGAGGCTTTT
GAAAAGATATTTAAGAACAAAATATCATTAATTGCCACAAATCAACAACATGTCATAAAT
CAGACAAGTGAAATAATTTCTGTCCAAGACAACTCAATAAATATTATCGGATTATCGAAA
GACTTTACTCTGTCCGAAACAAAAAACACCAATGAGGATTGTATTTCTACAGAAATCACT
AGGAAACAAAGTTCAAACTCATTTGTCGTACATCAAGAAAATTCAGAGAATCAAATTAGC
GAAAGCATTGAATGGAGCAGCTATAGAAAGTACCTAAAGTCTATAAGTGGTAGCAAATGC
GGTATTTTATGGCTCATAATTCTATTTATATTCGCTCAACTGAACACGAGCGGATTAGAG
CTATTCATATCGAAGTGGCTCAATCATGTGGAAATGGTGCCGTATCGACATGTGCTGAGT
GTGAATTTCACGGCAAA

>g155.t2 Gene=g155 Length=212
MILKLFEIEKEIQALPNGDDTLVDEFCLSDSFKMRIHLARCLYRNADIYVIDNCFSDIAT
NQVAEAFEKIFKNKISLIATNQQHVINQTSEIISVQDNSINIIGLSKDFTLSETKNTNED
CISTEITRKQSSNSFVVHQENSENQISESIEWSSYRKYLKSISGSKCGILWLIILFIFAQ
LNTSGLELFISKWLNHVEMVPYRHVLSVNFTA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g155.t2 Gene3D G3DSA:3.40.50.300 - 1 151 3.0E-12
1 g155.t2 PANTHER PTHR24223 ATP-BINDING CASSETTE SUB-FAMILY C 2 196 9.2E-21
2 g155.t2 PANTHER PTHR24223:SF271 FI20146P1-RELATED 2 196 9.2E-21
7 g155.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 168 -
8 g155.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 169 190 -
6 g155.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 191 212 -
4 g155.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 3 107 6.58E-11
3 g155.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 168 190 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC
GO:0008559 ABC-type xenobiotic transporter activity MF
GO:0042908 xenobiotic transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed