General information for g15518.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15518 is located on chr_4: 5753321..5754043 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15518 | g15518.t1 | TSS | g15518.t1 | 5753132 | 5753132 |
| chr_4 | g15518 | g15518.t1 | isoform | g15518.t1 | 5753321 | 5754043 |
| chr_4 | g15518 | g15518.t1 | exon | g15518.t1.exon1 | 5753321 | 5754043 |
| chr_4 | g15518 | g15518.t1 | cds | g15518.t1.CDS1 | 5753321 | 5754043 |
| chr_4 | g15518 | g15518.t1 | TTS | g15518.t1 | 5754060 | 5754060 |
Sequences
>g15518.t1 Gene=g15518 Length=723
ATGAATTCAGCTCATTGTTATTATTGTGGAATCGAAGTAGAATTACCTGAACAATATCAA
CAATATTATAATGAGAATAATCAACTAACTGAAGAACTAAAAACTGTCAAAAAAGAATTG
CAACAATTAAAAGATGAAAATCCGATTTTTAATGACATAAAGAAGATTTTATCTGATCCA
GATTTTAAAGATTTCACAATCAACGTCGGTCAATCATCGTTCAAAGTTCACAAAACTCTT
TTTGCTGCTCGAAGTGCAACTTTGGCTGAAATTTTCAAAAATAATCCAGATGCACAAGAA
CTAAATCTCAAGGATATCCCAGAGTCAATTTTTAAAGCTGTTCATGATTTTGTTTACAAC
AATCAACTACCGGAAGATGAAAATTCTTTTATTGAAATCTTCGCTGCTGCTGCTCGACTT
AAAATTGAAGATTTAATAAAAAGAACAAGTGCTGAAATATTGACAAAAATTGATGTGAAA
AATGCATTTGAAATTCTCGTATTGAGCAACAAATTTGATCATGAACAAATGAGACAAAAA
TCTTTTAAAATTATTCAAAGGAAAATTTTTCCTAATCGAAAACTTGATGCTGAACTTGCA
AAACAACCTGAAAAATTGAAGAAATTGATTGAAATGAAAACAAAACTTGACAAAGAACAA
AAGGAACTGAATGAAAAATTTCAGAATTTATGGAAGGAAATTGAAGATGACAAAAAAGAA
TAA
>g15518.t1 Gene=g15518 Length=240
MNSAHCYYCGIEVELPEQYQQYYNENNQLTEELKTVKKELQQLKDENPIFNDIKKILSDP
DFKDFTINVGQSSFKVHKTLFAARSATLAEIFKNNPDAQELNLKDIPESIFKAVHDFVYN
NQLPEDENSFIEIFAAAARLKIEDLIKRTSAEILTKIDVKNAFEILVLSNKFDHEQMRQK
SFKIIQRKIFPNRKLDAELAKQPEKLKKLIEMKTKLDKEQKELNEKFQNLWKEIEDDKKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15518.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 64 | 140 | 1.96414E-13 |
| 7 | g15518.t1 | Coils | Coil | Coil | 19 | 46 | - |
| 6 | g15518.t1 | Coils | Coil | Coil | 206 | 229 | - |
| 5 | g15518.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 30 | 188 | 1.2E-26 |
| 2 | g15518.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 42 | 212 | 1.0E-14 |
| 3 | g15518.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 42 | 212 | 1.0E-14 |
| 1 | g15518.t1 | Pfam | PF00651 | BTB/POZ domain | 57 | 153 | 4.9E-14 |
| 10 | g15518.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 63 | 127 | 12.971 |
| 9 | g15518.t1 | SMART | SM00225 | BTB_4 | 63 | 157 | 3.5E-12 |
| 4 | g15518.t1 | SUPERFAMILY | SSF54695 | POZ domain | 50 | 151 | 2.2E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
