Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease inhibitor 42Dd.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15529 g15529.t1 isoform g15529.t1 5775129 5776884
chr_4 g15529 g15529.t1 exon g15529.t1.exon1 5775129 5775395
chr_4 g15529 g15529.t1 cds g15529.t1.CDS1 5775129 5775395
chr_4 g15529 g15529.t1 exon g15529.t1.exon2 5775448 5776034
chr_4 g15529 g15529.t1 cds g15529.t1.CDS2 5775448 5776034
chr_4 g15529 g15529.t1 exon g15529.t1.exon3 5776158 5776371
chr_4 g15529 g15529.t1 cds g15529.t1.CDS3 5776158 5776371
chr_4 g15529 g15529.t1 exon g15529.t1.exon4 5776864 5776884
chr_4 g15529 g15529.t1 cds g15529.t1.CDS4 5776864 5776884
chr_4 g15529 g15529.t1 TSS g15529.t1 NA NA
chr_4 g15529 g15529.t1 TTS g15529.t1 NA NA

Sequences

>g15529.t1 Gene=g15529 Length=1089
ATGGAAAAGTGTTTTGTAATGAATGTTACTGGTTCTAATTATTTAAATAATGCTATTTTA
TCACCAATTTCGATTGATATTTCTCTCTCAATTCTTCTTATCGGATCGAGTGGCTTAACA
TTTAAGCAACTTTTGACTGGTCTTAAATATCCAACTAATTACAGCATCAATTTGATACAA
AGCAATTCTTTTTTATTGATTAAAAGTATGAAAAAAGCTGGCGGAATTGAATATGCGACA
AAAATTTACGTAAACGAGAAATTTTCACTTCAAAATGTTTACAAATCAGCAATTCAAAAA
TATTTTCACTCAGGAATTGAAACAATGAATTTTTCTGATCGACAAAAATCAGCAAACACT
ATCAATGATTTCATTTCTACTTCAACTAATGGAATGATTGAGAATATGCTTAAAGAATCT
GACATTAATCTTGATTCTTCTTTTATACTTATTAATTGCATTTATTTCAAAGGAATTTGG
GTCAATCAATTTAACAAAAATAAAACAACTGAAGATGATTTTATGGTAAATGAAACATAT
TCAATTAAAATTCCTTTTATGAAGACGAAAGCAAAATTCAAATTTGGGTTTATTAATGAG
CTCAATGGTTCAAGTGTCATTGAACTTCCTTATGCTAACTCAAATTTAACTTTAACAATC
GTTTTGCCATCAAAAGATATTGATTTAAATAATTTAATTCAACTTTCAAAAAATTATGAC
TGGAAAAATCTTTCAAATAGATTAAGAAATCAAACACTTTCAGTCGAAATTCCTAAATTT
AATGCAACTATAAATCAATTTTTAAACAGGCCTTTAATAAAAATGGGAATGGATTCACTT
TTTGATTCTTCAACGGCTCAATTAAATCATATTGTGCATAATAATGGAACTCCAATTCGT
GTTACACTTGATTATTTATATCATCAAGCTGTTATCAATATTGATGAAGAAGGAACCACA
GCTGCCGCTACTACTGCTGCAAGTTCTCGATCAATGCCAATAACCTTCCTAGCGACAAAA
CCATTTTTGTATCTATTAAGAACAAGCTCAACCATTTACTTTATTGGACATTTTACTGGG
AAAAATTAA

>g15529.t1 Gene=g15529 Length=362
MEKCFVMNVTGSNYLNNAILSPISIDISLSILLIGSSGLTFKQLLTGLKYPTNYSINLIQ
SNSFLLIKSMKKAGGIEYATKIYVNEKFSLQNVYKSAIQKYFHSGIETMNFSDRQKSANT
INDFISTSTNGMIENMLKESDINLDSSFILINCIYFKGIWVNQFNKNKTTEDDFMVNETY
SIKIPFMKTKAKFKFGFINELNGSSVIELPYANSNLTLTIVLPSKDIDLNNLIQLSKNYD
WKNLSNRLRNQTLSVEIPKFNATINQFLNRPLIKMGMDSLFDSSTAQLNHIVHNNGTPIR
VTLDYLYHQAVINIDEEGTTAAATTAASSRSMPITFLATKPFLYLLRTSSTIYFIGHFTG
KN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g15529.t1 Gene3D G3DSA:3.30.497.10 Antithrombin 15 324 3.6E-83
6 g15529.t1 Gene3D G3DSA:2.30.39.10 - 156 358 3.6E-83
2 g15529.t1 PANTHER PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN 16 358 4.6E-56
1 g15529.t1 Pfam PF00079 Serpin (serine protease inhibitor) 16 358 6.9E-77
5 g15529.t1 SMART SM00093 serpin2 7 361 4.2E-63
4 g15529.t1 SUPERFAMILY SSF56574 Serpins 15 359 1.3E-79
3 g15529.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005615 extracellular space CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed