General information for g15532.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15532 is located on chr_4: 5780442..5782214 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15532 | g15532.t1 | TTS | g15532.t1 | 5780269 | 5780269 |
| chr_4 | g15532 | g15532.t1 | isoform | g15532.t1 | 5780442 | 5782214 |
| chr_4 | g15532 | g15532.t1 | exon | g15532.t1.exon1 | 5780442 | 5782214 |
| chr_4 | g15532 | g15532.t1 | cds | g15532.t1.CDS1 | 5780442 | 5782214 |
| chr_4 | g15532 | g15532.t1 | TSS | g15532.t1 | 5782283 | 5782283 |
Sequences
>g15532.t1 Gene=g15532 Length=1773
ATGGCATTAATTGAGTGTAATTTTATAAAAACTCAGAATATTTATTCTGCTACAGTTTCA
AAAAATAAATTATTAGAAGTTGTTTATTTTTATGGTAATCATAAAAATAATAAAAATAAT
TTTGATGTCACTTGGCTTTATTTTCATTCTTCTGAATTTATAAAAATGCCAAGAAATATT
CATGAGAGTTTTCCAAATTTGAATGAATTGACAATAAGCAGCTGTAAATTAAACTCTATT
GAACGTGAGAATCTTAGTAACTTGCCTAATTTGGCAAAAATTATAATCTATGATTGTGGA
CTGAAGAAATTAAATGGAGATTTATTCAGAGACTTAAAGAAACTTGAGTATATTTCTTTT
TTCAATAATAAACTTGAGGAAATTGATCCTACGATTCTTAGTGAACTTCCAAAACTTTGG
TATGTAGATTTTAGAAAAAATTCCAACATTGATATGTTATTTGACTCAAAAATTCCAAAC
GGAAAAACTTTACAAGATTTAAATCGGGAAATCTTTCACAAATGTCAACCAAAACCAAGA
ATTGATCTATCTGTTCAATCAGGACCATCAGAACAACAAAAACTTCAACAAAATAATGCA
TTTGAAATAGAAAATCAAAAACTTAAATCGGAAATTAATAAATTGAAAACTGAATTGAAT
TACTCAAATGATACAATTGAAGATTTAGATCATTTGGCAAATAAACATCGAAGAGAAATC
ACAATTTTATTGGCAAAACAGTCAAGACTAGATAAAGAACTTAGAGATGCAAACCAAATT
GCAAATGAAATTAAAAACTTAAAAGCTCAAAATAAAAATCTTGATAATTTGGTCAATAAT
CAACGTAAGCAGCTCACAAGTTTGTTGGCAAAACAATCAAGACAGGACAAAGTTATCAAA
GACACAAACAGAATCGCAAACGAAAATGAAAGCTTAAAAGCAGAAATTAAAAAATTAAAA
AATGAAAATATTAATTTAAAATCAGAAATTCAAAAAATAAACAATGAAAATTCGAAGCAA
GCAGCAGTAAGCCAAAAACCTCAATCAGAAAATTCTACCTCACATACATCACATATTATG
ACAGAAAACACAATTCTACGAAAAGAACGACAAAATTTAAAGTCTGAAAATGAAAGACTT
CAAAGTTCATTACGTAATCAAGAAATATTAATTAAAAATCAACGTGAAAACCTCAAAACC
CTTCAAGAAAAGAGAAAAATTGATCCATCAGTAAATGAAATCAAGAGAATTCTAAACGAT
CCAGCATTTAAAGATTTCACAATCAATGTCGGTGAATCATCATTTAAAGTTCATAAAATT
CTTTTTGCAGCTCGAAGTGCAACTTTGAATGAAATTTTTAAAAACAATCCAGAAGCTGAG
GAGTTAAATTTGCGAGACATTCCAGAGTCAACTTTCAAAGTCATTTATGATTTTATTTAC
AATAATCGACTGTCGGATAATGCGAATTATATTGAAGTTATAACAGCAGCTATTCGATTA
AAAATAAATGACTTGATTGAAATCGCTCCATCGACACTTTTAAATAAAATTGATGAAAAA
AATGCATGCGATGTTCTTGTGTTGAGTAATAAAATCAACAATGAAAAATTGCGACAAAAA
GCATTTGAAATAATTCAAATAAAAATCTTTCCTGAGCGAAAACTTGCTGATGAATTAGCA
AAACAACCTGAGAAATTAAAGGCACTAATTGATGTGAAGAAGAAGTTTGATGAAGAATTT
GAAAATTTAGCAGTAAAAGGTGAAAGAAACTGA
>g15532.t1 Gene=g15532 Length=590
MALIECNFIKTQNIYSATVSKNKLLEVVYFYGNHKNNKNNFDVTWLYFHSSEFIKMPRNI
HESFPNLNELTISSCKLNSIERENLSNLPNLAKIIIYDCGLKKLNGDLFRDLKKLEYISF
FNNKLEEIDPTILSELPKLWYVDFRKNSNIDMLFDSKIPNGKTLQDLNREIFHKCQPKPR
IDLSVQSGPSEQQKLQQNNAFEIENQKLKSEINKLKTELNYSNDTIEDLDHLANKHRREI
TILLAKQSRLDKELRDANQIANEIKNLKAQNKNLDNLVNNQRKQLTSLLAKQSRQDKVIK
DTNRIANENESLKAEIKKLKNENINLKSEIQKINNENSKQAAVSQKPQSENSTSHTSHIM
TENTILRKERQNLKSENERLQSSLRNQEILIKNQRENLKTLQEKRKIDPSVNEIKRILND
PAFKDFTINVGESSFKVHKILFAARSATLNEIFKNNPEAEELNLRDIPESTFKVIYDFIY
NNRLSDNANYIEVITAAIRLKINDLIEIAPSTLLNKIDEKNACDVLVLSNKINNEKLRQK
AFEIIQIKIFPERKLADELAKQPEKLKALIDVKKKFDEEFENLAVKGERN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g15532.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 425 | 500 | 2.44746E-14 |
| 11 | g15532.t1 | Coils | Coil | Coil | 191 | 225 | - |
| 9 | g15532.t1 | Coils | Coil | Coil | 250 | 291 | - |
| 10 | g15532.t1 | Coils | Coil | Coil | 302 | 336 | - |
| 8 | g15532.t1 | Coils | Coil | Coil | 363 | 404 | - |
| 6 | g15532.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 184 | 2.6E-18 |
| 7 | g15532.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 396 | 547 | 2.8E-24 |
| 14 | g15532.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 361 | - |
| 15 | g15532.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 365 | - |
| 3 | g15532.t1 | PANTHER | PTHR24410 | HL07962P-RELATED | 330 | 545 | 4.2E-12 |
| 1 | g15532.t1 | Pfam | PF13855 | Leucine rich repeat | 89 | 147 | 9.5E-8 |
| 2 | g15532.t1 | Pfam | PF00651 | BTB/POZ domain | 418 | 514 | 1.6E-13 |
| 16 | g15532.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 424 | 488 | 13.984 |
| 13 | g15532.t1 | SMART | SM00225 | BTB_4 | 424 | 517 | 1.8E-13 |
| 4 | g15532.t1 | SUPERFAMILY | SSF52058 | L domain-like | 11 | 167 | 1.51E-18 |
| 5 | g15532.t1 | SUPERFAMILY | SSF54695 | POZ domain | 411 | 516 | 3.14E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
