General information for g15533.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15533 is located on chr_4: 5782525..5784096 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15533 | g15533.t1 | isoform | g15533.t1 | 5782525 | 5784096 |
| chr_4 | g15533 | g15533.t1 | exon | g15533.t1.exon1 | 5782525 | 5784096 |
| chr_4 | g15533 | g15533.t1 | cds | g15533.t1.CDS1 | 5782525 | 5784096 |
| chr_4 | g15533 | g15533.t1 | TSS | g15533.t1 | NA | NA |
| chr_4 | g15533 | g15533.t1 | TTS | g15533.t1 | NA | NA |
Sequences
>g15533.t1 Gene=g15533 Length=1572
ATGGAAGTTATTAAATGTGTTTTTGAAGAATCAGTTAATGATTATTGTTGTACTGTCAAT
AAAGAAACTATAAACAATAAAGTTTTCTTTTCGGGTATTCATAAAGCTAATTTCCAAAAT
TGTGATGTTACAATGATACAATTTACTGAATGCAATATTATCAAATTTCCAAAAAACATA
CATGAAATTTTTAATAATTTGAAACTGTTTAGTGCAAGTGATTGCAAAATGGAATTAATT
ACACGAGAGCATCTTGGAAAAATGCCAAATTTAACATCAATTATAATTATAAATTGTGGA
CTTAAGAAACTAAAAGGAGACATATTTAGAGATTTAAAGAAACTCTCATTTATTTCATTT
GCAAATAACAAAATTGAAGAAATTGATCCGACACTTTTAAATGGACTTGATATGCTCAGT
TATGTTGACTTTCGTGGAAATATAAATATTAACCTTACTTTTGATTCAAATATTTCGAAT
TCTATTTCATTGGATGATATGAAAAGAGAAATCAAATTAAAATGTAAATCTAAAAAATCA
AAAGTTCTCAATATGCAAGATGGAATGGCAAAAGAGCAAGCTAGTTCACATAAATTTCAA
CAAAATGAAGAATTACTTAAAGAACATCAAAACTTGAAGAAAGAAGCACAAAATATAAAA
GCTGAATTTGAAAAGTTAAAAAATTCATTAAAAGAACGTGAAATTTTGATTAAAAATCAG
CGTCAACAAATCACAATTTTGCTAGCCAAACAATCAAAACAAGAAAAAACATTGAAAGAG
GCACAAAAATTAAAAAATGAAAATGAAACTTTAAAAATTTCACTTCAAAACCAAAGTTCT
GTTCCTAATTTTATCAAACCACAGCTGATTTTCAAAAATGTAGACCAGATTACAAAAGAC
TATTTAACAAACAACGCAGCTTTGATGTCGAAAAACATAAATTTGGAAAAAAAATTGGAA
AATTTAAAAGCTGAAAATGAATTACTTCGAACATCATTAGAAAAGCAAAATTTGAATAAA
AAATCAGAACTTAACATCAGTTTCGGCAACGAAAACAAAAATGCTACATTAGTTGGAATA
GAGAAAATTTTAAATGATGCAGAGTTTAAAGATTTCACAATCAATGTCGGTGAATCATCA
TATAAAGTTCACAAAATTCTTTTTGCAGCTCGAAGTGCAACTTTGGCTGAAATTTTTAAA
AACAATCCAGATGCACAAGAATTAAATCTTAAAGATACTTCAGAAATAACATTTAAAGCT
GTTTATGATTTTGTCTACAGCAACCAACTTCCAGACGATGTGAACTATCTTGAAATTTTT
GCTGCAGCTTCGCGTCTGAAAATTAAGGAATTATTTGAATTGGCTGCAGTTTGTTTGATT
AGCAACGTTGATGAAAGAAATGCATTTGACATTCTTCTTATTAGCAACAAATTCGATCAT
GAAAAATTAATTCTTAAAGCATTTGAAACAATTCAAACAAAAATTTTTCCAGACAGAAAA
CTTGATATTGCACTTGCAAGATATCCAGAGAAAATAAAACAGTTGATTATTGTCAAGAAA
AGAGAGATTTGA
>g15533.t1 Gene=g15533 Length=523
MEVIKCVFEESVNDYCCTVNKETINNKVFFSGIHKANFQNCDVTMIQFTECNIIKFPKNI
HEIFNNLKLFSASDCKMELITREHLGKMPNLTSIIIINCGLKKLKGDIFRDLKKLSFISF
ANNKIEEIDPTLLNGLDMLSYVDFRGNININLTFDSNISNSISLDDMKREIKLKCKSKKS
KVLNMQDGMAKEQASSHKFQQNEELLKEHQNLKKEAQNIKAEFEKLKNSLKEREILIKNQ
RQQITILLAKQSKQEKTLKEAQKLKNENETLKISLQNQSSVPNFIKPQLIFKNVDQITKD
YLTNNAALMSKNINLEKKLENLKAENELLRTSLEKQNLNKKSELNISFGNENKNATLVGI
EKILNDAEFKDFTINVGESSYKVHKILFAARSATLAEIFKNNPDAQELNLKDTSEITFKA
VYDFVYSNQLPDDVNYLEIFAAASRLKIKELFELAAVCLISNVDERNAFDILLISNKFDH
EKLILKAFETIQTKIFPDRKLDIALARYPEKIKQLIIVKKREI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g15533.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 371 | 446 | 2.69288E-13 |
| 10 | g15533.t1 | Coils | Coil | Coil | 199 | 243 | - |
| 8 | g15533.t1 | Coils | Coil | Coil | 247 | 281 | - |
| 9 | g15533.t1 | Coils | Coil | Coil | 305 | 341 | - |
| 6 | g15533.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 168 | 1.5E-16 |
| 7 | g15533.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 338 | 494 | 1.9E-22 |
| 1 | g15533.t1 | Pfam | PF13855 | Leucine rich repeat | 89 | 147 | 3.9E-7 |
| 2 | g15533.t1 | Pfam | PF00651 | BTB/POZ domain | 363 | 460 | 7.9E-12 |
| 11 | g15533.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 370 | 434 | 12.226 |
| 5 | g15533.t1 | SMART | SM00225 | BTB_4 | 370 | 463 | 1.2E-11 |
| 3 | g15533.t1 | SUPERFAMILY | SSF52058 | L domain-like | 30 | 164 | 4.91E-14 |
| 4 | g15533.t1 | SUPERFAMILY | SSF54695 | POZ domain | 360 | 462 | 5.02E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
