General information for g15534.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15534 is located on chr_4: 5785295..5785893 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15534 | g15534.t1 | TTS | g15534.t1 | 5784065 | 5784065 |
| chr_4 | g15534 | g15534.t1 | isoform | g15534.t1 | 5784226 | 5785893 |
| chr_4 | g15534 | g15534.t1 | exon | g15534.t1.exon1 | 5784226 | 5785893 |
| chr_4 | g15534 | g15534.t1 | cds | g15534.t1.CDS1 | 5784226 | 5785893 |
| chr_4 | g15534 | g15534.t1 | TSS | g15534.t1 | 5785961 | 5785961 |
Sequences
>g15534.t1 Gene=g15534 Length=1668
ATGCCAAAAATCAAGTGTGAATTTTCTAAAGTACCGGAAGGTTATATTTGTGAAATAAAA
AATCAATACGATTTTTATGAAGAACAAATTACTTTTTATGGAAAACACAAAGGAAAAAAA
CAAAATTCTGACGTCATTGGATTGAACTTTTCTGATTGTTCATTTATGATTTTACCGCTA
AATATTGCTGAAATTTTTCCAAACCTTAAGTACTTAAGTTTTCATGATTGCGTTGGTTTG
GAATCAATTAGAAAAAAACATCTTGAAAAGTTGACAAATTTAACTCATCTTTATATCGTT
AAATGTGGATTGTTAAAATTAAGTGGAGATTTGCTTAAAGGTTTGAAAAATCTTGAATCA
GTTAGTTTTTCTGATAACAAATTAACTGAAATTGATCCAACGATTTTTGATGGATTAGAA
AATCTGAAGAATGTGAATTTATTATATAATGCAAATATTAGCACGTCTTGCATTACTGAA
CTTGGCGAAAATGTGGAAAATATTAAAAAAGAAATTCGATTAAAATGTCAGCCAAAAATA
ACTGCAGAAAAATCAGTACAAACTGATATCACCAACAAATTAATGCAGTTAAAAGATGAA
GAAAATGACAAAAATTTAAATTTCTTAAAATTTGAGGTTAAACAACTAAAAATTTCGATT
AATGAAAAAGAACAACAAATTGCAACTTTATCAGCAAAGCAATCAGAACATGAAAAAATC
AAAAAAGGAATGCAAAAAATCATGGATGAAAATAAAGAGCTCAAAACTTCTCTTCAAGCT
CATGAAATTTTGGCTGATAATCAACGAGTTCGTATTCAAGATTTGATGATTTTATTGTCA
AAAAATAATCAAACAATGAAGGAATTGGAAACGTTGAAGAATGAAAACAAGAATTTGAGG
TTAACAATAATGGATCGTGAAACTCTTGTTAAAAATCAAAGACAAGAACTTTCGATTTTA
CTAGCAAAACAATCAAAACAAGACCAAATAATTAAGGATGCACGAAAAGCAACAGATGAA
AATTTAAAATTAAAAAGTTGTTTGAAAAAAGAGGGAACAATTGTTGACAATCAAAGAAAA
ACAATTAGAAGATTGTTAGATGAAAAACAGAAAAATAAATCATTCAATAATGTTACAAAA
ATTCTAAATGATCCAGCATTTAAAGATTTTACTTTTAATGTAGGTAAATCATCATTCAAA
GTTCACAAAATTCTTTTTGCTGCTCGAAGTGAAACTTTGGCTGAAATCTTCAAAAACAAT
CCAGATGCACAAGAACTAAACTTTAAAGATATTCCAGAGGAAACATTTAAAGCTGTTTAT
GATTTTGTCTACACCAATCAACTTCCAGGCGATATTGACCATGTCAAAGTTTTTGCTGCT
GCAATTCGATTGAAGATCAATGATTTATGTGATGAAACTGCTTTACAATTATTAGATAAA
GTTGATGAGAAAAATGCTTTAGAAATTTTAGAATTGAGCAATAAATTCGTTCATGAACAA
TTACGACAAAAAGCTTTTGAAATAATTCAAAGAAAAATTTTTCCTGATCGAATACTTCCT
AGAGATTTGATAAAACAGCCTGAAAATGTAAGAAAATTGATTGAACTGAAAAAGAAAATG
GATGAAGAATACGAAAAATGTTGCAACAAACTAAAAGTTTTAAAATAA
>g15534.t1 Gene=g15534 Length=555
MPKIKCEFSKVPEGYICEIKNQYDFYEEQITFYGKHKGKKQNSDVIGLNFSDCSFMILPL
NIAEIFPNLKYLSFHDCVGLESIRKKHLEKLTNLTHLYIVKCGLLKLSGDLLKGLKNLES
VSFSDNKLTEIDPTIFDGLENLKNVNLLYNANISTSCITELGENVENIKKEIRLKCQPKI
TAEKSVQTDITNKLMQLKDEENDKNLNFLKFEVKQLKISINEKEQQIATLSAKQSEHEKI
KKGMQKIMDENKELKTSLQAHEILADNQRVRIQDLMILLSKNNQTMKELETLKNENKNLR
LTIMDRETLVKNQRQELSILLAKQSKQDQIIKDARKATDENLKLKSCLKKEGTIVDNQRK
TIRRLLDEKQKNKSFNNVTKILNDPAFKDFTFNVGKSSFKVHKILFAARSETLAEIFKNN
PDAQELNFKDIPEETFKAVYDFVYTNQLPGDIDHVKVFAAAIRLKINDLCDETALQLLDK
VDEKNALEILELSNKFVHEQLRQKAFEIIQRKIFPDRILPRDLIKQPENVRKLIELKKKM
DEEYEKCCNKLKVLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g15534.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 389 | 464 | 5.06146E-15 |
| 9 | g15534.t1 | Coils | Coil | Coil | 206 | 240 | - |
| 8 | g15534.t1 | Coils | Coil | Coil | 244 | 264 | - |
| 10 | g15534.t1 | Coils | Coil | Coil | 275 | 309 | - |
| 6 | g15534.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 9 | 261 | 5.2E-18 |
| 7 | g15534.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 357 | 512 | 4.4E-25 |
| 3 | g15534.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 218 | 540 | 6.4E-14 |
| 1 | g15534.t1 | Pfam | PF13855 | Leucine rich repeat | 92 | 150 | 5.3E-9 |
| 2 | g15534.t1 | Pfam | PF00651 | BTB/POZ domain | 382 | 472 | 1.9E-12 |
| 13 | g15534.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 388 | 448 | 13.302 |
| 12 | g15534.t1 | SMART | SM00225 | BTB_4 | 388 | 481 | 2.5E-12 |
| 4 | g15534.t1 | SUPERFAMILY | SSF52058 | L domain-like | 47 | 155 | 1.97E-17 |
| 5 | g15534.t1 | SUPERFAMILY | SSF54695 | POZ domain | 375 | 478 | 5.1E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
