Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15534 g15534.t2 isoform g15534.t2 5785295 5785893
chr_4 g15534 g15534.t2 exon g15534.t2.exon1 5785295 5785305
chr_4 g15534 g15534.t2 cds g15534.t2.CDS1 5785295 5785305
chr_4 g15534 g15534.t2 exon g15534.t2.exon2 5785368 5785893
chr_4 g15534 g15534.t2 cds g15534.t2.CDS2 5785368 5785893
chr_4 g15534 g15534.t2 TSS g15534.t2 5785961 5785961
chr_4 g15534 g15534.t2 TTS g15534.t2 NA NA

Sequences

>g15534.t2 Gene=g15534 Length=537
ATGCCAAAAATCAAGTGTGAATTTTCTAAAGTACCGGAAGGTTATATTTGTGAAATAAAA
AATCAATACGATTTTTATGAAGAACAAATTACTTTTTATGGAAAACACAAAGGAAAAAAA
CAAAATTCTGACGTCATTGGATTGAACTTTTCTGATTGTTCATTTATGATTTTACCGCTA
AATATTGCTGAAATTTTTCCAAACCTTAAGTACTTAAGTTTTCATGATTGCGTTGGTTTG
GAATCAATTAGAAAAAAACATCTTGAAAAGTTGACAAATTTAACTCATCTTTATATCGTT
AAATGTGGATTGTTAAAATTAAGTGGAGATTTGCTTAAAGGTTTGAAAAATCTTGAATCA
GTTAGTTTTTCTGATAACAAATTAACTGAAATTGATCCAACGATTTTTGATGGATTAGAA
AATCTGAAGAATGTGAATTTATTATATAATGCAAATATTAGCACGTCTTGCATTACTGAA
CTTGGCGAAAATGTGGAAAATATTAAAAAAGAAATTCGATTAAAATTTAAAAGATGA

>g15534.t2 Gene=g15534 Length=178
MPKIKCEFSKVPEGYICEIKNQYDFYEEQITFYGKHKGKKQNSDVIGLNFSDCSFMILPL
NIAEIFPNLKYLSFHDCVGLESIRKKHLEKLTNLTHLYIVKCGLLKLSGDLLKGLKNLES
VSFSDNKLTEIDPTIFDGLENLKNVNLLYNANISTSCITELGENVENIKKEIRLKFKR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g15534.t2 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 1 170 0
1 g15534.t2 Pfam PF13855 Leucine rich repeat 92 150 0
2 g15534.t2 SUPERFAMILY SSF52058 L domain-like 47 155 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed