General information for g15535.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15535 is located on chr_4: 5787720..5788221 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15535 | g15535.t1 | isoform | g15535.t1 | 5786875 | 5788221 |
| chr_4 | g15535 | g15535.t1 | exon | g15535.t1.exon1 | 5786875 | 5788221 |
| chr_4 | g15535 | g15535.t1 | cds | g15535.t1.CDS1 | 5786875 | 5788221 |
| chr_4 | g15535 | g15535.t1 | TSS | g15535.t1 | 5788283 | 5788283 |
| chr_4 | g15535 | g15535.t1 | TTS | g15535.t1 | NA | NA |
Sequences
>g15535.t1 Gene=g15535 Length=1347
ATGTCAATAGTAGAGTGTAAATTTGAAAATTATACAGATTATTGTTGCATAATATCAAAA
CAAGAAATCAATGACGAACAAATATTCTTCGATGGTGTTCATAAGGAACCAAAACGAAAT
TTTGATGTCGATCATTTACAATTTTTCAATTGTGTCTTCCGTAAAATGCCGAAAAATTTT
CATGAAAATTTTCCAAACTTGACAAAATTGAGCTTTTGGAATTCAAAAATGAATTTTATA
GAACGTGAACATATTGGAAAATTGACAGAATTAAGATCATTGATGGTCATCAATTGTGGA
TTGCAAAACCTTAATGGTGATCTTCTTTGTGATCTTAAAAAGCTTCAAAGAATTTCTTTT
GCAAATAATAAGATTGAAAATATTGATCCAGAAATTTTAGATGGTTTAAATTATTTGAAG
TTTGTAAATTTTCATGGTAACTTGTGCATTAATAGTTTATACGATTCTGAATCACCAGAA
ACAAAAACATTGGCAAGTATAAAAGAAGAAATTTTGTACAAACATAAACCGAGACCTACA
GCTCCAGTATTTCGTCCTCAACCAATGCCTATGCCACAATTACCTACTTCTAAACAACCA
CAAAATACAGATCCCATTGATATACTACCACCACCATATGATGAAAAATTTGAAATTCAA
AGATGGAAAACTGAAAATGAACACTTAAAGGCAGAAATTAAAAATCTCAAATTTTTACTG
CAGCAACAAGAAATCATGATAACAGAGCAACAAAATAAAGTTTTCAATACAGATGAAGAA
AATCAAAAAGAAGAAATCATGGAGAAAATTTTTGACGATGAAGATTTCAAAGATTTTACA
ATTCATGTTGGTGATTCATCATTTAGCATTCATAAGCTAATTTTTGCTGCTTACAGTTCA
TATTTTGCTGACAATTTTAAAAATAACACAGAAACAAAGGAATTGAATCTTCATGACATT
ACTGTAACAACTTTCAGAATTGTCTATGATTTTATTTATAACAATGAACTTCCTGAAGAT
GCAAATTATCTTGAAATTTTAATTGCTGCTGAGAAATTTCAAATCAATGAACTTATAAAA
GCAGCTTCTGCAAAATCGCTTGATAAAATTGATGAAAAAAATGCATTTGAAGTTCTTGAA
CTTAGCAATAAAATTAATAATGAAAAATTGCAACAAAAAGCATTCGAAATTATACAAACA
AAAATTTTTCCTGATCGAAATATTGATAATAAATTGGCAAAACAAACAGACATATTAAAA
AAATTAATTGACATGAAGAAAAAAATGGATGAAGAATATGAAAAAATGTTGCAAGGAGTT
GAAAATGCTAAAATATTTGAGGAATAA
>g15535.t1 Gene=g15535 Length=448
MSIVECKFENYTDYCCIISKQEINDEQIFFDGVHKEPKRNFDVDHLQFFNCVFRKMPKNF
HENFPNLTKLSFWNSKMNFIEREHIGKLTELRSLMVINCGLQNLNGDLLCDLKKLQRISF
ANNKIENIDPEILDGLNYLKFVNFHGNLCINSLYDSESPETKTLASIKEEILYKHKPRPT
APVFRPQPMPMPQLPTSKQPQNTDPIDILPPPYDEKFEIQRWKTENEHLKAEIKNLKFLL
QQQEIMITEQQNKVFNTDEENQKEEIMEKIFDDEDFKDFTIHVGDSSFSIHKLIFAAYSS
YFADNFKNNTETKELNLHDITVTTFRIVYDFIYNNELPEDANYLEILIAAEKFQINELIK
AASAKSLDKIDEKNAFEVLELSNKINNEKLQQKAFEIIQTKIFPDRNIDNKLAKQTDILK
KLIDMKKKMDEEYEKMLQGVENAKIFEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g15535.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 278 | 353 | 6.33319E-18 |
| 8 | g15535.t1 | Coils | Coil | Coil | 219 | 246 | - |
| 6 | g15535.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 167 | 3.7E-17 |
| 7 | g15535.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 244 | 401 | 2.0E-29 |
| 2 | g15535.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 236 | 406 | 8.9E-18 |
| 3 | g15535.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 236 | 406 | 8.9E-18 |
| 1 | g15535.t1 | Pfam | PF00651 | BTB/POZ domain | 268 | 364 | 3.8E-18 |
| 11 | g15535.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 277 | 341 | 15.411 |
| 10 | g15535.t1 | SMART | SM00225 | BTB_4 | 277 | 370 | 2.5E-16 |
| 4 | g15535.t1 | SUPERFAMILY | SSF52058 | L domain-like | 41 | 325 | 5.44E-17 |
| 5 | g15535.t1 | SUPERFAMILY | SSF54695 | POZ domain | 265 | 361 | 5.65E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
