General information for g15536.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15536 is located on chr_4: 5789039..5790355 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15536 | g15536.t1 | isoform | g15536.t1 | 5789039 | 5790355 |
| chr_4 | g15536 | g15536.t1 | exon | g15536.t1.exon1 | 5789039 | 5790355 |
| chr_4 | g15536 | g15536.t1 | cds | g15536.t1.CDS1 | 5789039 | 5790355 |
| chr_4 | g15536 | g15536.t1 | TSS | g15536.t1 | 5790408 | 5790408 |
| chr_4 | g15536 | g15536.t1 | TTS | g15536.t1 | NA | NA |
Sequences
>g15536.t1 Gene=g15536 Length=1317
ATGGCAAAAATTAATTGTGAATTTCAATTTTCTTTACATCAATACACTTGCAATGTAATA
GAAAACATAAATCATTTTGAAGAAATTAAATTTTTTGGTTATCACAAGAAAAATCAACAA
AATAAAAACGTAAAAAGCTTAAATTTTATTGACAGCACTTTAATCAAAATACCAACAAAT
ATTGCTGATAATTTTTCAAACTTGACATGGTTAAGATTTTGGAATTGTAAAATTGAAGAC
ATTGAACAAAAACACATCAAAAATTTGAAAAATTTAACTTTATTTTATGTCAACAATTGT
GGACTGAAAAAATTAAAAGGTGACTTGTTTGAAGGTTTAAAAAATCTTGAATATATTTCA
TTTGCAAATAATGAAATCGAAGAAATTGATTCAAAAATTCTTGATGTTTTAAATTTGCTT
AAATATGCAAGTTTTCGTGGAAACAAAAATATTGACATGGTCTTCGATTCAAGAATATCA
AATGGAAAGACTTTAGAAGATTTCAAGAATGAAATAAAATCAAAATTTCAACCAAAATTG
AAACAATTAGTACAACCAAAAAATGATGAAAAAACAAAAAAGATTCAAGAATTAATGGCT
GAAATTAGTAATTTAAAAATTTTACAGCAACATCAAGAAGTTTTGATAAAAAATCAAAGA
GAAGAGATTAAAAATTTACTTGTAAAACAAACAAAACAAGAAAGAATTATGAAAGAAATT
AAAAATGAAAATTTAAATTTGAAAAAACAAGAAAAAGAAAGTTTTCAAAAAATGTTTGAT
GAAGAAGAATTTAAAGATTTTACAATTCATGTTGGTGATTCATCTTTTAAAATTCATAAA
GTTCTTTTTGCTGCTCATAGTAAAATTTTAGCTAAAATTTTCAAAGAAAATCCACAAGCT
GAAGAATTAAATCTGTGTGACATTTCTGAGGCAACTTTTAAAATTATTTATGATTTTTTC
TATAAAAACCACATAAAAGAAAATGAAAATTTCATTGATATTTTTGTTGCAGCTTCACAA
CTAAAAATTAATGATTTGATTGAATTTTCCATAGAAAAATTGCTAAAAAATATAAATGAA
AATAATTTTCTAGAAATTTTGAATCTTAGTAATAAATTTGATAATAAAGATTTGCAAAAG
AAAGCTTTTGAAATAATTCAAAGTAAATTTTTTTCTCATCAAAAACTTGATGAAAAATTG
GTTAATCAGCCTGAGAAAATAAAAGAATTAAATGAAACGAAAAACAGAAATTCGACATCA
AGTTTAGATTTTAAAAAAGAACTTTTAGAAAAAAAATATAAAAAATTATCAAACTAA
>g15536.t1 Gene=g15536 Length=438
MAKINCEFQFSLHQYTCNVIENINHFEEIKFFGYHKKNQQNKNVKSLNFIDSTLIKIPTN
IADNFSNLTWLRFWNCKIEDIEQKHIKNLKNLTLFYVNNCGLKKLKGDLFEGLKNLEYIS
FANNEIEEIDSKILDVLNLLKYASFRGNKNIDMVFDSRISNGKTLEDFKNEIKSKFQPKL
KQLVQPKNDEKTKKIQELMAEISNLKILQQHQEVLIKNQREEIKNLLVKQTKQERIMKEI
KNENLNLKKQEKESFQKMFDEEEFKDFTIHVGDSSFKIHKVLFAAHSKILAKIFKENPQA
EELNLCDISEATFKIIYDFFYKNHIKENENFIDIFVAASQLKINDLIEFSIEKLLKNINE
NNFLEILNLSNKFDNKDLQKKAFEIIQSKFFSHQKLDEKLVNQPEKIKELNETKNRNSTS
SLDFKKELLEKKYKKLSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g15536.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 266 | 341 | 2.50256E-14 |
| 8 | g15536.t1 | Coils | Coil | Coil | 188 | 208 | - |
| 10 | g15536.t1 | Coils | Coil | Coil | 223 | 253 | - |
| 9 | g15536.t1 | Coils | Coil | Coil | 426 | 438 | - |
| 6 | g15536.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 9 | 202 | 3.8E-17 |
| 7 | g15536.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 229 | 389 | 5.8E-27 |
| 3 | g15536.t1 | PANTHER | PTHR24410 | HL07962P-RELATED | 248 | 390 | 7.5E-14 |
| 1 | g15536.t1 | Pfam | PF13855 | Leucine rich repeat | 91 | 142 | 2.0E-6 |
| 2 | g15536.t1 | Pfam | PF00651 | BTB/POZ domain | 255 | 356 | 4.2E-14 |
| 13 | g15536.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 265 | 329 | 13.901 |
| 12 | g15536.t1 | SMART | SM00225 | BTB_4 | 265 | 358 | 9.7E-12 |
| 4 | g15536.t1 | SUPERFAMILY | SSF52058 | L domain-like | 39 | 157 | 1.29E-16 |
| 5 | g15536.t1 | SUPERFAMILY | SSF54695 | POZ domain | 252 | 358 | 4.76E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed