Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15537 g15537.t1 isoform g15537.t1 5790829 5792181
chr_4 g15537 g15537.t1 exon g15537.t1.exon1 5790829 5792181
chr_4 g15537 g15537.t1 cds g15537.t1.CDS1 5790829 5792181
chr_4 g15537 g15537.t1 TSS g15537.t1 NA NA
chr_4 g15537 g15537.t1 TTS g15537.t1 NA NA

Sequences

>g15537.t1 Gene=g15537 Length=1353
ATGACAACAATAAGATGTAAATTCAGACAATCGATTTTAGGCTATCAGTGCTATATTACA
ATTCAATTAATCTCAAGTACTTCAATAAAACTTCAAGGCAATCATCACGAGGCAGGAAAA
ACAAATGACGATGTGGAAAATCTTTATTTTCACGATTGCACTTTCAATGGATTTCCAATA
AATCTTCATATACTTTTTCCAAATTTGACTGGAATCACAATTCAAAAATCTCGACTTAAT
CAAGGTCTTTTGAGAGAACATTTGACGGAATTTAAAGAGAATTTAGTAACAATTTATGTC
ACACATTCTGATTTGAAGAAATTAAATGGTGATCTTTTCAAAGATTTTAAAAAACTTGAA
AAAGTTTCTTTTGCCAATAATAAACTAGAAGAAATTGGAGCTGAAATTCTTGATGGACTT
TGGTTTTTGAATATTGTTGATTTTAGAGGAAATACAAACATTGACATTTGGTACAATTCT
AATAACGATAATTCAAGTTTACTTGAGGAAGTCAAAAATGCTATAAAGAGCAAATGCAAA
CGTAAACCAAAACAGCATTTTGTACAACAACAACAGCAGGTAAAAATGCCACAGCAGCAT
TTAAGAATGCCACAACAGCCACCAATTTTAGTTATGCAACCACAAATGCAGCCAGTAATG
ATGAAGAATCCATGGTCAAATGCAGAAAAAATTTTACTGAGAGAAAACGAAAAACTGACA
ATTGAAAATTCCAATTTGAGAGCTGCAATAAAAAATCAAGAAGAATTTATTAAGAAGTTA
CAAGAAGAAAATAAAAATTTAATGAAGCAGCTTGAACGACAGCCAAGACATGAAAATCCA
ATTTTATATTATAAGAAAAATGCATCTCTTAATCCAAACTTCAAAGATTTGACAATTAAT
ATTGGTGAATCTTCGTTCAAAGTTCACAAAAATCTTTTTGCAGCTCAGAGCAAGACTTTG
GCTGAACATTTCAAAAACAATCCCGATTTAGAAGTATTAAAACTTAAAGATATTCCAGAG
ATTACTTTTAAAGCTGTTTATGATTTTATCTACAAAAATCAACTACCAGAAGATGCAAAT
TACATTGATGTTTATAAAGCTGCTGCTCGTCTTAAAATTGATAATTTATTAAAAATAACA
ACTGCAAAATTGATTGATTCTATTGATAAAAACAATGCATGCGATATTCTTATTTTAGGC
AATAAGTCCAATAATGAACAATTGCGACAAAAAGCACTTGAAGCAATTCAATTAAAAATT
TTTTCTGATCAAAAACTTGAAGTTGATTTGTCTAAACAGGAAGAAATGTTGGAGCAGTAC
GGAGCAGCTGGAGTTGATAACAATAAGATGTAA

>g15537.t1 Gene=g15537 Length=450
MTTIRCKFRQSILGYQCYITIQLISSTSIKLQGNHHEAGKTNDDVENLYFHDCTFNGFPI
NLHILFPNLTGITIQKSRLNQGLLREHLTEFKENLVTIYVTHSDLKKLNGDLFKDFKKLE
KVSFANNKLEEIGAEILDGLWFLNIVDFRGNTNIDIWYNSNNDNSSLLEEVKNAIKSKCK
RKPKQHFVQQQQQVKMPQQHLRMPQQPPILVMQPQMQPVMMKNPWSNAEKILLRENEKLT
IENSNLRAAIKNQEEFIKKLQEENKNLMKQLERQPRHENPILYYKKNASLNPNFKDLTIN
IGESSFKVHKNLFAAQSKTLAEHFKNNPDLEVLKLKDIPEITFKAVYDFIYKNQLPEDAN
YIDVYKAAARLKIDNLLKITTAKLIDSIDKNNACDILILGNKSNNEQLRQKALEAIQLKI
FSDQKLEVDLSKQEEMLEQYGAAGVDNNKM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g15537.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 296 371 1.31207E-12
7 g15537.t1 Coils Coil Coil 236 277 -
5 g15537.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 18 208 9.3E-10
6 g15537.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 286 422 2.5E-22
1 g15537.t1 Pfam PF00651 BTB/POZ domain 291 386 2.3E-11
8 g15537.t1 ProSiteProfiles PS50097 BTB domain profile. 295 359 11.73
4 g15537.t1 SMART SM00225 BTB_4 295 388 1.5E-9
2 g15537.t1 SUPERFAMILY SSF52058 L domain-like 34 159 4.42E-10
3 g15537.t1 SUPERFAMILY SSF54695 POZ domain 276 387 9.81E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values