General information for g15538.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15538 is located on chr_4: 5793532..5794845 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15538 | g15538.t2 | isoform | g15538.t2 | 5793109 | 5794845 |
| chr_4 | g15538 | g15538.t2 | exon | g15538.t2.exon1 | 5793109 | 5793286 |
| chr_4 | g15538 | g15538.t2 | TTS | g15538.t2 | 5793121 | 5793121 |
| chr_4 | g15538 | g15538.t2 | cds | g15538.t2.CDS1 | 5793193 | 5793286 |
| chr_4 | g15538 | g15538.t2 | exon | g15538.t2.exon2 | 5793557 | 5794845 |
| chr_4 | g15538 | g15538.t2 | cds | g15538.t2.CDS2 | 5793557 | 5794845 |
| chr_4 | g15538 | g15538.t2 | TSS | g15538.t2 | 5795003 | 5795003 |
Sequences
>g15538.t2 Gene=g15538 Length=1467
ATGACAACAATAAGATGTAAATTCAGACCATCGTTTTTAGGCTATCAATGCTATATTACA
ACTCAAAATATCTCAAATATTGCAGTTAAACTTCAAGGTAATCATCACGAAGCAGGCAAA
ACAAATGACGATGTGAAAAATCTTTATTTTCACGATTGCACTTTCAATGGATTTCCGATA
AATCTTCATATACTTTTACCCCATTTAAGTGGCATTGAAATTCAAAAATCTCGACTTAAT
CAAGGTCTTTTGAGAGAACATTTGATGAAATTTGAAAGCTTGACAGCAATTTATGTGACA
CATTCTGATTTGAAAAAATTAGATGGTGATCTTTTCAAAGATTTACGACAGCTTGAAAGA
ATTTCTTTTGCTAATAATAAACTGGAAGAAATTGGAGCTGAAATTCTTGATGGACTTTGG
TTTTTGAATATTGTTGATTTCAGAGGAAATACAAACATTGACATTTGGTACAATTCTAAT
AACGTTAATTCAAGTTCACTTGAGGAAGTCAAAAATGCTATAAAGAGCAAATGCAAGCCT
AAACCAAAACAGCATTTTGTACAACAACAACAGCAGGTAAAAATGCCACAGCAGCCACCA
ATTTTAGTTATACAACCACAGATGCAACCTTTGATGATGGAAGATGCAAGATCAAATGCA
GAAAAAATTTTACTGAGAGAAAACGAAAAACTGACAATTGAAAATTCCAATTTGAGAGCT
GCAATAAAAAATCAAGAAGAATTTATTAAGAAGCTACAAGAAGAAAATAAAAATTTAATG
AAGCAGCTTGAACGACAGCCAAGACATGAAAATCCAATTTTTAATGATATCAAAAAAATT
CTTATTGATCCAGATTTCAAAGATTTTACTTTCAATGTCAGTGAATCTTCGTTTAAAGTT
CACAAAATTCTTTTTGCAGCTCGAAGTGCAACTTTGGCTGAAATTTTTAAAAACAATCCA
GATGCACAAGAACTGAACTTGGACGATACTCCAGTGATGACATTTAAAGCTGTTTATGAT
TTTGTTTACAACAATCAACTGCCAGAAGATGCAAATTACATTGAAGTTTTCATTGCTGCT
GCTCGTCTTAAAATTGATGATTTATTAAAATCAACCACTACAAAATTGATTGATTCAATT
AATGAAAAAAATGCATTGGAAATTCTCTTGTTAGGTAATAAATTCAATAACGAGCAGTTG
CGACAAAAAGGTTTTGAGACAATTCAATTAAAAATTTTCCCTGATCGTAAACTTGAAGTT
GATTTGGCTAAACAACCAGAAAAGTTGAAGAAATTAATAGAAATCAAGCAAAAGATGGAC
AAAGAATATGAAGCAATGTTACAACAAGACGGAGCAGCTGGATTTGATTACAAAAAGATC
TGAAAACTTTTTTCTTAATAAGTTTATTGAATTTAACAAAATTTATTTTAAACAAATAAA
GTTTTTATTTTTTCAAAAATTTTAAAT
>g15538.t2 Gene=g15538 Length=460
MTTIRCKFRPSFLGYQCYITTQNISNIAVKLQGNHHEAGKTNDDVKNLYFHDCTFNGFPI
NLHILLPHLSGIEIQKSRLNQGLLREHLMKFESLTAIYVTHSDLKKLDGDLFKDLRQLER
ISFANNKLEEIGAEILDGLWFLNIVDFRGNTNIDIWYNSNNVNSSSLEEVKNAIKSKCKP
KPKQHFVQQQQQVKMPQQPPILVIQPQMQPLMMEDARSNAEKILLRENEKLTIENSNLRA
AIKNQEEFIKKLQEENKNLMKQLERQPRHENPIFNDIKKILIDPDFKDFTFNVSESSFKV
HKILFAARSATLAEIFKNNPDAQELNLDDTPVMTFKAVYDFVYNNQLPEDANYIEVFIAA
ARLKIDDLLKSTTTKLIDSINEKNALEILLLGNKFNNEQLRQKGFETIQLKIFPDRKLEV
DLAKQPEKLKKLIEIKQKMDKEYEAMLQQDGAAGFDYKKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g15538.t2 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 288 | 363 | 8.50826E-12 |
| 10 | g15538.t2 | Coils | Coil | Coil | 228 | 269 | - |
| 9 | g15538.t2 | Coils | Coil | Coil | 429 | 449 | - |
| 7 | g15538.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 8 | 200 | 1.5E-11 |
| 8 | g15538.t2 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 253 | 410 | 2.0E-23 |
| 3 | g15538.t2 | PANTHER | PTHR26379:SF344 | - | 272 | 403 | 5.8E-12 |
| 4 | g15538.t2 | PANTHER | PTHR26379 | BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 | 272 | 403 | 5.8E-12 |
| 1 | g15538.t2 | Pfam | PF13855 | Leucine rich repeat | 93 | 139 | 2.2E-6 |
| 2 | g15538.t2 | Pfam | PF00651 | BTB/POZ domain | 285 | 378 | 6.9E-12 |
| 13 | g15538.t2 | ProSiteProfiles | PS50097 | BTB domain profile. | 287 | 351 | 12.33 |
| 12 | g15538.t2 | SMART | SM00225 | BTB_4 | 287 | 380 | 8.7E-10 |
| 5 | g15538.t2 | SUPERFAMILY | SSF52058 | L domain-like | 30 | 167 | 8.16E-12 |
| 6 | g15538.t2 | SUPERFAMILY | SSF54695 | POZ domain | 267 | 379 | 1.05E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
