Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15539 g15539.t1 isoform g15539.t1 5795833 5796408
chr_4 g15539 g15539.t1 exon g15539.t1.exon1 5795833 5796408
chr_4 g15539 g15539.t1 cds g15539.t1.CDS1 5795833 5796408
chr_4 g15539 g15539.t1 TSS g15539.t1 NA NA
chr_4 g15539 g15539.t1 TTS g15539.t1 NA NA

Sequences

>g15539.t1 Gene=g15539 Length=576
ATGAAAACGATAAATTGTAAATTTTTGTCTGAGACTTCAGGCTACAAGTGTATTATAGAT
TCATTATCACTAACAAATGAACCAATTGCAATTTCAACTCATCATAAAAGCAACAAATCA
AATAAAAATGTCAAAATCCTTCATTTTTCTCTCTGCACATTCGATGGATTTCCAACAAAT
ATTCATGACATTTTTCCAGAACTGATGTGTCTCAAAATCAAAAATTCAAAATTTCCTCAT
GGAATAAAAAGAGAAAATTTCGCACAATTAAATAATTTGATCGAACTTTCAATTACAAAT
TGCGATTTGAAAGTTTTACCAGAAGATTTGTTAAATGACTTGCTGGAACTTGAAAACATT
TCATTTGCTAACAACAAAATTGAAGAAATTGATGAAAAGATCTTTGATAATCTTTTTTAT
TTGTCATTTATTGATTTGAGAGGAAACACAAATATAAATATTCAATATAGTGGAACAAAT
ACTTCTTCCACCTCTCTTGATGATGTTAAAAATGCAATTAAATCAATGTCATTACAAGAA
GAGAAGAAATTTGAAATTTTACAAGAAGAAAATTAA

>g15539.t1 Gene=g15539 Length=191
MKTINCKFLSETSGYKCIIDSLSLTNEPIAISTHHKSNKSNKNVKILHFSLCTFDGFPTN
IHDIFPELMCLKIKNSKFPHGIKRENFAQLNNLIELSITNCDLKVLPEDLLNDLLELENI
SFANNKIEEIDEKIFDNLFYLSFIDLRGNTNINIQYSGTNTSSTSLDDVKNAIKSMSLQE
EKKFEILQEEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g15539.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 2 189 0
1 g15539.t1 SUPERFAMILY SSF52058 L domain-like 23 155 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed