General information for g15555.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger and BTB domain-containing protein 24.
Parent gene
- The parent gene g15555 is located on chr_4: 5842356..5843171 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15555 | g15555.t1 | isoform | g15555.t1 | 5841471 | 5843171 |
| chr_4 | g15555 | g15555.t1 | exon | g15555.t1.exon1 | 5841471 | 5842118 |
| chr_4 | g15555 | g15555.t1 | cds | g15555.t1.CDS1 | 5841471 | 5842118 |
| chr_4 | g15555 | g15555.t1 | exon | g15555.t1.exon2 | 5842455 | 5842952 |
| chr_4 | g15555 | g15555.t1 | cds | g15555.t1.CDS2 | 5842455 | 5842952 |
| chr_4 | g15555 | g15555.t1 | exon | g15555.t1.exon3 | 5843010 | 5843171 |
| chr_4 | g15555 | g15555.t1 | cds | g15555.t1.CDS3 | 5843010 | 5843171 |
| chr_4 | g15555 | g15555.t1 | TTS | g15555.t1 | 5843206 | 5843206 |
| chr_4 | g15555 | g15555.t1 | TSS | g15555.t1 | NA | NA |
Sequences
>g15555.t1 Gene=g15555 Length=1308
ATGTCACAAAATAATTGCAGACTTTGTAATTCATCAAATACAAAATTGACTTCATCAATA
AATGATGAAATAATTGTGCATTTGATAGATTTTGTGCCTCATTTAAATGTTGATATAAAA
GACACCAAACTACCGACTACTGTTTGTCAGCTTTGTTATGGAAAAGCAAAAGTTTCTTAT
GACTTTTTAGTTAAAATTCAACAAACACAAGAAAAATTAAAAAATTCAAATAATCTAAGA
AAAATTTCAAATCTTAAAATTACAAACCCAAAATCCTTAAACTCAAATGAAATTTTTGAA
AAGATTCAAAAAGTTGGTTCAATTAGCATCAAAAAAGTTTCAGCAATTAATGAAACTGTA
ACTGAAACTCAAAATGATGATTTAATTGAAGAATATGAAATGTTGGATGAGGAAGATTGC
ATAGACATTGATGCATCATCAGATGATGATTATAATTATGATGAAAATGAAGATGATGAT
GACGATGATGATGATGCTGAGGAATATTTAGAAGAAGATGAAGATTCTGATGATAATTAT
GAGCCTAATGGAAAGAAAAGAAAATCGAATGATGGAAAAAGCAAAGGAAACGAAGGAAGT
ACAAAAAAATTTATCCCAACTAGTGGTCAGAGACAGAAATTTTCTATTGATCCAGCACGT
GAAATAATAATCGATGCACCAATCAGCTATTCTTGTGCTAAATGTAAATCAAAATTTCCA
ACATTTGAAGCACTCACAGCTCACATGAAAGCAAAAGATTGCCAAGATGAAGAATTTTCA
TGTAATATTTGCAGTAAAGTTTTCAAGAATAAAAAGAATCTTTATGCTCATATGGCAACC
CATAAACCAAAAGAGAAATTCATTTGTGAAGTTTGTGCAAAGGAATATAATCATCAATTT
GATCTAGAGTCACATATGGAAAGTGTTCATCATCGTGTTGTCAAAAGAGACTGCATTTAT
AGATGCACTCATTGTGAAGAGAAATTTAATTCACATTTGGACTTATTAGAGCATGTCAAA
GAACATCAAAGAGAGAAAAAAGAAGCGCCAAGATTGTGTGAAATTTGTGCAAAAGTTTGT
GCTAATTTAAAGGCTTATCAATCACATATTGTTATTCATAAAGAGAAGAAAGCTCATACT
TGTATTCATTGTGGTAAAGGATTTGCAAAAGCATTTTTAATGACACAACATATGCACATT
CATACAGGCATCAAAGGATTTACATGCGATATTTGTAATAAAAGTTATGCAAAAAGAGAT
TCATTAAGAATTCACAAGAAAAGAGATCATCCTGAATTAATGATGTAA
>g15555.t1 Gene=g15555 Length=435
MSQNNCRLCNSSNTKLTSSINDEIIVHLIDFVPHLNVDIKDTKLPTTVCQLCYGKAKVSY
DFLVKIQQTQEKLKNSNNLRKISNLKITNPKSLNSNEIFEKIQKVGSISIKKVSAINETV
TETQNDDLIEEYEMLDEEDCIDIDASSDDDYNYDENEDDDDDDDDAEEYLEEDEDSDDNY
EPNGKKRKSNDGKSKGNEGSTKKFIPTSGQRQKFSIDPAREIIIDAPISYSCAKCKSKFP
TFEALTAHMKAKDCQDEEFSCNICSKVFKNKKNLYAHMATHKPKEKFICEVCAKEYNHQF
DLESHMESVHHRVVKRDCIYRCTHCEEKFNSHLDLLEHVKEHQREKKEAPRLCEICAKVC
ANLKAYQSHIVIHKEKKAHTCIHCGKGFAKAFLMTQHMHIHTGIKGFTCDICNKSYAKRD
SLRIHKKRDHPELMM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g15555.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 195 | 285 | 4.1E-11 |
| 14 | g15555.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 286 | 352 | 4.9E-7 |
| 15 | g15555.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 353 | 401 | 2.1E-8 |
| 13 | g15555.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 405 | 433 | 2.9E-8 |
| 30 | g15555.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 178 | - |
| 31 | g15555.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 211 | - |
| 29 | g15555.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 198 | - |
| 6 | g15555.t1 | PANTHER | PTHR24390:SF142 | IP01005P | 96 | 358 | 9.9E-40 |
| 8 | g15555.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 96 | 358 | 9.9E-40 |
| 7 | g15555.t1 | PANTHER | PTHR24390:SF142 | IP01005P | 287 | 426 | 9.9E-40 |
| 9 | g15555.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 287 | 426 | 9.9E-40 |
| 1 | g15555.t1 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 6 | 75 | 9.2E-7 |
| 3 | g15555.t1 | Pfam | PF13912 | C2H2-type zinc finger | 230 | 251 | 0.018 |
| 5 | g15555.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 259 | 281 | 6.0E-6 |
| 2 | g15555.t1 | Pfam | PF12874 | Zinc-finger of C2H2 type | 287 | 308 | 0.014 |
| 4 | g15555.t1 | Pfam | PF13912 | C2H2-type zinc finger | 407 | 431 | 2.4E-4 |
| 20 | g15555.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 261 | 281 | - |
| 19 | g15555.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 322 | 342 | - |
| 18 | g15555.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 381 | 401 | - |
| 17 | g15555.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 409 | 430 | - |
| 35 | g15555.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 259 | 286 | 11.448 |
| 33 | g15555.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 287 | 310 | 9.494 |
| 36 | g15555.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 320 | 347 | 11.614 |
| 34 | g15555.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 379 | 406 | 11.822 |
| 32 | g15555.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 407 | 430 | 10.201 |
| 21 | g15555.t1 | SMART | SM00868 | zf_AD_2 | 5 | 76 | 5.5E-6 |
| 26 | g15555.t1 | SMART | SM00355 | c2h2final6 | 230 | 250 | 22.0 |
| 27 | g15555.t1 | SMART | SM00355 | c2h2final6 | 259 | 281 | 2.3E-4 |
| 24 | g15555.t1 | SMART | SM00355 | c2h2final6 | 287 | 310 | 0.012 |
| 28 | g15555.t1 | SMART | SM00355 | c2h2final6 | 320 | 342 | 0.0022 |
| 25 | g15555.t1 | SMART | SM00355 | c2h2final6 | 351 | 373 | 1.9 |
| 23 | g15555.t1 | SMART | SM00355 | c2h2final6 | 379 | 401 | 0.22 |
| 22 | g15555.t1 | SMART | SM00355 | c2h2final6 | 407 | 430 | 0.0052 |
| 12 | g15555.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 259 | 306 | 4.61E-10 |
| 11 | g15555.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 319 | 373 | 2.64E-5 |
| 10 | g15555.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 373 | 425 | 2.68E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
