Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15555 g15555.t2 isoform g15555.t2 5841471 5843171
chr_4 g15555 g15555.t2 exon g15555.t2.exon1 5841471 5842118
chr_4 g15555 g15555.t2 cds g15555.t2.CDS1 5841471 5842118
chr_4 g15555 g15555.t2 exon g15555.t2.exon2 5842462 5842952
chr_4 g15555 g15555.t2 cds g15555.t2.CDS2 5842462 5842473
chr_4 g15555 g15555.t2 exon g15555.t2.exon3 5843010 5843171
chr_4 g15555 g15555.t2 TTS g15555.t2 5843206 5843206
chr_4 g15555 g15555.t2 TSS g15555.t2 NA NA

Sequences

>g15555.t2 Gene=g15555 Length=1301
ATGTCACAAAATAATTGCAGACTTTGTAATTCATCAAATACAAAATTGACTTCATCAATA
AATGATGAAATAATTGTGCATTTGATAGATTTTGTGCCTCATTTAAATGTTGATATAAAA
GACACCAAACTACCGACTACTGTTTGTCAGCTTTGTTATGGAAAAGCAAAAGTTTCTTAT
GACTTTTTAGTTAAAATTCAACAAACACAAGAAAAATTAAAAAATTCAAATAATCTAAGA
AAAATTTCAAATCTTAAAATTACAAACCCAAAATCCTTAAACTCAAATGAAATTTTTGAA
AAGATTCAAAAAGTTGGTTCAATTAGCATCAAAAAAGTTTCAGCAATTAATGAAACTGTA
ACTGAAACTCAAAATGATGATTTAATTGAAGAATATGAAATGTTGGATGAGGAAGATTGC
ATAGACATTGATGCATCATCAGATGATGATTATAATTATGATGAAAATGAAGATGATGAT
GACGATGATGATGATGCTGAGGAATATTTAGAAGAAGATGAAGATTCTGATGATAATTAT
GAGCCTAATGGAAAGAAAAGAAAATCGAATGATGGAAAAAGCAAAGGAAACGAAGGAAGT
ACAAAAAAATTTATCCCAACTAGTGGTCAGAGACAGAAATTTTCTATTCACGTGAAATAA
TAATCGATGCACCAATCAGCTATTCTTGTGCTAAATGTAAATCAAAATTTCCAACATTTG
AAGCACTCACAGCTCACATGAAAGCAAAAGATTGCCAAGATGAAGAATTTTCATGTAATA
TTTGCAGTAAAGTTTTCAAGAATAAAAAGAATCTTTATGCTCATATGGCAACCCATAAAC
CAAAAGAGAAATTCATTTGTGAAGTTTGTGCAAAGGAATATAATCATCAATTTGATCTAG
AGTCACATATGGAAAGTGTTCATCATCGTGTTGTCAAAAGAGACTGCATTTATAGATGCA
CTCATTGTGAAGAGAAATTTAATTCACATTTGGACTTATTAGAGCATGTCAAAGAACATC
AAAGAGAGAAAAAAGAAGCGCCAAGATTGTGTGAAATTTGTGCAAAAGTTTGTGCTAATT
TAAAGGCTTATCAATCACATATTGTTATTCATAAAGAGAAGAAAGCTCATACTTGTATTC
ATTGTGGTAAAGGATTTGCAAAAGCATTTTTAATGACACAACATATGCACATTCATACAG
GCATCAAAGGATTTACATGCGATATTTGTAATAAAAGTTATGCAAAAAGAGATTCATTAA
GAATTCACAAGAAAAGAGATCATCCTGAATTAATGATGTAA

>g15555.t2 Gene=g15555 Length=219
MSQNNCRLCNSSNTKLTSSINDEIIVHLIDFVPHLNVDIKDTKLPTTVCQLCYGKAKVSY
DFLVKIQQTQEKLKNSNNLRKISNLKITNPKSLNSNEIFEKIQKVGSISIKKVSAINETV
TETQNDDLIEEYEMLDEEDCIDIDASSDDDYNYDENEDDDDDDDDAEEYLEEDEDSDDNY
EPNGKKRKSNDGKSKGNEGSTKKFIPTSGQRQKFSIHVK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g15555.t2 MobiDBLite mobidb-lite consensus disorder prediction 144 178 -
7 g15555.t2 MobiDBLite mobidb-lite consensus disorder prediction 144 219 -
4 g15555.t2 MobiDBLite mobidb-lite consensus disorder prediction 179 198 -
6 g15555.t2 MobiDBLite mobidb-lite consensus disorder prediction 200 219 -
1 g15555.t2 Pfam PF07776 Zinc-finger associated domain (zf-AD) 6 75 2.9E-7
3 g15555.t2 SMART SM00868 zf_AD_2 5 76 5.5E-6
2 g15555.t2 SUPERFAMILY SSF57716 Glucocorticoid receptor-like (DNA-binding domain) 5 74 3.28E-5

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0008270 zinc ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed