Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15556 g15556.t4 TSS g15556.t4 5843654 5843654
chr_4 g15556 g15556.t4 isoform g15556.t4 5844588 5845646
chr_4 g15556 g15556.t4 exon g15556.t4.exon1 5844588 5844636
chr_4 g15556 g15556.t4 cds g15556.t4.CDS1 5844634 5844636
chr_4 g15556 g15556.t4 exon g15556.t4.exon2 5844898 5845413
chr_4 g15556 g15556.t4 cds g15556.t4.CDS2 5844898 5845413
chr_4 g15556 g15556.t4 exon g15556.t4.exon3 5845473 5845646
chr_4 g15556 g15556.t4 cds g15556.t4.CDS3 5845473 5845646
chr_4 g15556 g15556.t4 TTS g15556.t4 NA NA

Sequences

>g15556.t4 Gene=g15556 Length=739
TTTCAAAGCAGATTGTTTAAGAAATGAAAAAAGTCAGGTTTATGAGATGTTGTCGAATTT
TTCAGCAAATCCTGAATATGAAGTGAAATCGAAAAATTCAATTATTTGGACTGATGATCA
TTTCATTGCACAAGGTCATCTATTTTTCTCTGCTGGTCTCGCAACTTCATCAGTTGTTCT
TGAAACAGTTGCTTACTATCTTGCAGTGAATAAAAATTATCAAAATGAAATAATCAAAGA
AGTCGATGCAGTTGAAAATCCAACTTATGAAGCAATTCATAAAATGAAATTTCTTGACAT
GTTTATCAGTGAAGTTTTGAGACTTTGGGCTTCACCATTTTTGAATAGAGAATGTAATAA
GGATTATAAAATGGATTTTGGTGATGGAATTGTTATAAATGTAAAAAATGGCGATTTTGT
TCAATTTCCTGTTTGGTCAATTCATCATGATGAAAAATATTTTCCAAATCCAGAAGTTTT
TGATCCTTATCGATTTAGTGATGAAAGAAAAGGAGAAATTTTGAATTATTATATGCCATT
CGGTATTGGACCAAGAATTTGTATTGCTTCACGTTTTGCATTGATGGAAGTAAAAGTGCT
AATTTTTAAAATTTTATCAAAGTTTACTTTTGAAGCATGTGAAAAAACACCAAAGAAATT
GAAAGCAAAACCAAGTTTAACAGAATTTCAATTTACCGAAGATATTATTGTCGAATTGAA
ACCAAGGGATGGAAAATAA

>g15556.t4 Gene=g15556 Length=230
MLSNFSANPEYEVKSKNSIIWTDDHFIAQGHLFFSAGLATSSVVLETVAYYLAVNKNYQN
EIIKEVDAVENPTYEAIHKMKFLDMFISEVLRLWASPFLNRECNKDYKMDFGDGIVINVK
NGDFVQFPVWSIHHDEKYFPNPEVFDPYRFSDERKGEILNYYMPFGIGPRICIASRFALM
EVKVLIFKILSKFTFEACEKTPKKLKAKPSLTEFQFTEDIIVELKPRDGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g15556.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 4 230 1.6E-59
2 g15556.t4 PANTHER PTHR24292:SF91 CYP9F3-RELATED 15 225 2.9E-66
3 g15556.t4 PANTHER PTHR24292 CYTOCHROME P450 15 225 2.9E-66
8 g15556.t4 PRINTS PR00463 E-class P450 group I signature 25 42 6.7E-16
10 g15556.t4 PRINTS PR00385 P450 superfamily signature 36 53 2.0E-8
6 g15556.t4 PRINTS PR00463 E-class P450 group I signature 45 71 6.7E-16
11 g15556.t4 PRINTS PR00385 P450 superfamily signature 85 96 2.0E-8
4 g15556.t4 PRINTS PR00463 E-class P450 group I signature 128 152 6.7E-16
7 g15556.t4 PRINTS PR00463 E-class P450 group I signature 162 172 6.7E-16
12 g15556.t4 PRINTS PR00385 P450 superfamily signature 163 172 2.0E-8
5 g15556.t4 PRINTS PR00463 E-class P450 group I signature 172 195 6.7E-16
9 g15556.t4 PRINTS PR00385 P450 superfamily signature 172 183 2.0E-8
1 g15556.t4 Pfam PF00067 Cytochrome P450 21 209 4.6E-49
15 g15556.t4 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 165 174 -
14 g15556.t4 SUPERFAMILY SSF48264 Cytochrome P450 17 227 5.5E-55
13 g15556.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 32 54 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed