Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15556 g15556.t5 TSS g15556.t5 5843654 5843654
chr_4 g15556 g15556.t5 isoform g15556.t5 5844588 5845646
chr_4 g15556 g15556.t5 exon g15556.t5.exon1 5844588 5845248
chr_4 g15556 g15556.t5 cds g15556.t5.CDS1 5844634 5845248
chr_4 g15556 g15556.t5 exon g15556.t5.exon2 5845303 5845413
chr_4 g15556 g15556.t5 cds g15556.t5.CDS2 5845303 5845413
chr_4 g15556 g15556.t5 exon g15556.t5.exon3 5845473 5845646
chr_4 g15556 g15556.t5 cds g15556.t5.CDS3 5845473 5845646
chr_4 g15556 g15556.t5 TTS g15556.t5 NA NA

Sequences

>g15556.t5 Gene=g15556 Length=946
TTTCAAAGCAGATTGTTTAAGAAATGAAAAAAGTCAGGTTTATGAGATGGTTCAAAAAAT
TATCAAACCACCAAGTTCTGGAATTTTTAAAATTTTAATTTTTGTCTTTGCCAAATGGCT
CTACAAACTACTCAAGTTAAAAGTTCTTCCACCAGATGTTTATGAATTTTTCAAAGCAGC
AATTGTAAACGTCATGAAAGAGAGAGAAGAAAAAGGAATTTTTAGACCTGACGTAATCGA
ACTGTTAATGCGAGCTAAACGTGGACAATTAGCAGCTGCAGATAAAAATAATGAAGTCAA
TGAAGCTGAGTTGTCGAATTTTTCAGCAAATCCTGAATATGAAGTGAAATCGAAAAATTC
AATTATTTGGACTGATGATCATTTCATTGCACAAGGTCATCTATTTTTCTCTGCTGGTCT
CGCAACTTCATCAGTTGTTCTTGAAACAGTTGCTTACTATCTTGCAGTGAATAAAAATTA
TCAAAATGAAATAATCAAAGAAGTCGATGCAGTTGAAAATCCAACTTATGAAGCAATTCA
TAAAATGAAATTTCTTGACATGTTTATCAGTGAAGTTTTGAGACTTTGGGCTTCACCATT
TTTGAATAGAGAATGTAATAAGGATTATAAAATGGATTTTGGTGATGGAATTGTTATAAA
TAAATATTTTCCAAATCCAGAAGTTTTTGATCCTTATCGATTTAGTGATGAAAGAAAAGG
AGAAATTTTGAATTATTATATGCCATTCGGTATTGGACCAAGAATTTGTATTGCTTCACG
TTTTGCATTGATGGAAGTAAAAGTGCTAATTTTTAAAATTTTATCAAAGTTTACTTTTGA
AGCATGTGAAAAAACACCAAAGAAATTGAAAGCAAAACCAAGTTTAACAGAATTTCAATT
TACCGAAGATATTATTGTCGAATTGAAACCAAGGGATGGAAAATAA

>g15556.t5 Gene=g15556 Length=299
MVQKIIKPPSSGIFKILIFVFAKWLYKLLKLKVLPPDVYEFFKAAIVNVMKEREEKGIFR
PDVIELLMRAKRGQLAAADKNNEVNEAELSNFSANPEYEVKSKNSIIWTDDHFIAQGHLF
FSAGLATSSVVLETVAYYLAVNKNYQNEIIKEVDAVENPTYEAIHKMKFLDMFISEVLRL
WASPFLNRECNKDYKMDFGDGIVINKYFPNPEVFDPYRFSDERKGEILNYYMPFGIGPRI
CIASRFALMEVKVLIFKILSKFTFEACEKTPKKLKAKPSLTEFQFTEDIIVELKPRDGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g15556.t5 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 299 1.8E-54
3 g15556.t5 PANTHER PTHR24292 CYTOCHROME P450 13 196 3.5E-69
5 g15556.t5 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 13 196 3.5E-69
2 g15556.t5 PANTHER PTHR24292 CYTOCHROME P450 206 281 3.5E-69
4 g15556.t5 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 206 281 3.5E-69
7 g15556.t5 PRINTS PR00463 E-class P450 group I signature 112 129 8.8E-10
13 g15556.t5 PRINTS PR00385 P450 superfamily signature 123 140 4.7E-8
10 g15556.t5 PRINTS PR00463 E-class P450 group I signature 132 158 8.8E-10
11 g15556.t5 PRINTS PR00385 P450 superfamily signature 172 183 4.7E-8
9 g15556.t5 PRINTS PR00463 E-class P450 group I signature 197 221 8.8E-10
8 g15556.t5 PRINTS PR00463 E-class P450 group I signature 231 241 8.8E-10
12 g15556.t5 PRINTS PR00385 P450 superfamily signature 232 241 4.7E-8
6 g15556.t5 PRINTS PR00463 E-class P450 group I signature 241 264 8.8E-10
14 g15556.t5 PRINTS PR00385 P450 superfamily signature 241 252 4.7E-8
1 g15556.t5 Pfam PF00067 Cytochrome P450 34 278 3.0E-37
18 g15556.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
22 g15556.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 29 -
20 g15556.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 30 118 -
21 g15556.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 119 141 -
19 g15556.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 142 299 -
16 g15556.t5 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 234 243 -
15 g15556.t5 SUPERFAMILY SSF48264 Cytochrome P450 17 296 1.24E-50

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values