Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15556 g15556.t6 TSS g15556.t6 5843654 5843654
chr_4 g15556 g15556.t6 isoform g15556.t6 5844588 5845646
chr_4 g15556 g15556.t6 exon g15556.t6.exon1 5844588 5845408
chr_4 g15556 g15556.t6 cds g15556.t6.CDS1 5844634 5845408
chr_4 g15556 g15556.t6 exon g15556.t6.exon2 5845473 5845646
chr_4 g15556 g15556.t6 cds g15556.t6.CDS2 5845473 5845516
chr_4 g15556 g15556.t6 TTS g15556.t6 NA NA

Sequences

>g15556.t6 Gene=g15556 Length=995
TTTCAAAGCAGATTGTTTAAGAAATGAAAAAAGTCAGGTTTATGAGATGGTTCAAAAAAT
TATCAAACCACCAAGTTCTGGAATTTTTAAAATTTTAATTTTTGTCTTTGCCAAATGGCT
CTACAAACTACTCAAGTTAAAAGTTCTTCCACCAGATGTTTATGAATTTTTCAAAGCAGC
AATTGTAAACGTCATGAAAGAGAGAGAAGAAAAAGGAATTTTTAGACCTGACGTAATCGA
ACTGTTAATGCGAGCTAAACGTGGACAATTAGCAGCTGCAGATAAAAATAATGAAGTCAA
TGAAGCTGAGTTGTCGAATTTTTCAGCAAATCCTGAATATGAAGTGAAATCGAAAAATTC
AATTATTTGGACTGATGATCATTTCATTGCACAAGGTCATCTATTTTTCTCTGCTGGTCT
CGCAACTTCATCAGTTGTTCTTGAAACAGTTGCTTACTATCTTGCAGTGAATAAAAATTA
TCAAAATGAAATAATCAAAGAAGTCGATGCAGTTGAAAATCCAACTTATGAAGCAATTCA
TAAAATGAAATTTCTTGACATGTTTATCAGTGAAGTTTTGAGACTTTGGGCTTCACCATT
TTTGAATAGAGAATGTAATAAGGATTATAAAATGGATTTTGGTGATGGAATTGTTATAAA
TGTAAAAAATGGCGATTTTGTTCAATTTCCTGTTTGGTCAATTCATCATGATGAAAAATA
TTTTCCAAATCCAGAAGTTTTTGATCCTTATCGATTTAGTGATGAAAGAAAAGGAGAAAT
TTTGAATTATTATATGCCATTCGGTATTGGACCAAGAATTTGCTTCACGTTTTGCATTGA
TGGAAGTAAAAGTGCTAATTTTTAAAATTTTATCAAAGTTTACTTTTGAAGCATGTGAAA
AAACACCAAAGAAATTGAAAGCAAAACCAAGTTTAACAGAATTTCAATTTACCGAAGATA
TTATTGTCGAATTGAAACCAAGGGATGGAAAATAA

>g15556.t6 Gene=g15556 Length=272
MVQKIIKPPSSGIFKILIFVFAKWLYKLLKLKVLPPDVYEFFKAAIVNVMKEREEKGIFR
PDVIELLMRAKRGQLAAADKNNEVNEAELSNFSANPEYEVKSKNSIIWTDDHFIAQGHLF
FSAGLATSSVVLETVAYYLAVNKNYQNEIIKEVDAVENPTYEAIHKMKFLDMFISEVLRL
WASPFLNRECNKDYKMDFGDGIVINVKNGDFVQFPVWSIHHDEKYFPNPEVFDPYRFSDE
RKGEILNYYMPFGIGPRICFTFCIDGSKSANF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g15556.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 261 2.4E-50
2 g15556.t6 PANTHER PTHR24292 CYTOCHROME P450 13 261 4.3E-66
3 g15556.t6 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 13 261 4.3E-66
6 g15556.t6 PRINTS PR00463 E-class P450 group I signature 112 129 4.2E-11
9 g15556.t6 PRINTS PR00385 P450 superfamily signature 123 140 2.6E-5
7 g15556.t6 PRINTS PR00463 E-class P450 group I signature 132 158 4.2E-11
8 g15556.t6 PRINTS PR00385 P450 superfamily signature 172 183 2.6E-5
5 g15556.t6 PRINTS PR00463 E-class P450 group I signature 215 239 4.2E-11
4 g15556.t6 PRINTS PR00463 E-class P450 group I signature 249 259 4.2E-11
10 g15556.t6 PRINTS PR00385 P450 superfamily signature 250 259 2.6E-5
1 g15556.t6 Pfam PF00067 Cytochrome P450 34 259 7.1E-39
13 g15556.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
17 g15556.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 29 -
15 g15556.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 30 118 -
16 g15556.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 119 141 -
14 g15556.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 142 272 -
11 g15556.t6 SUPERFAMILY SSF48264 Cytochrome P450 16 259 4.98E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values