Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15556 g15556.t7 TSS g15556.t7 5843654 5843654
chr_4 g15556 g15556.t7 isoform g15556.t7 5844588 5845646
chr_4 g15556 g15556.t7 exon g15556.t7.exon1 5844588 5845413
chr_4 g15556 g15556.t7 cds g15556.t7.CDS1 5844634 5845413
chr_4 g15556 g15556.t7 exon g15556.t7.exon2 5845473 5845646
chr_4 g15556 g15556.t7 cds g15556.t7.CDS2 5845473 5845646
chr_4 g15556 g15556.t7 TTS g15556.t7 NA NA

Sequences

>g15556.t7 Gene=g15556 Length=1000
TTTCAAAGCAGATTGTTTAAGAAATGAAAAAAGTCAGGTTTATGAGATGGTTCAAAAAAT
TATCAAACCACCAAGTTCTGGAATTTTTAAAATTTTAATTTTTGTCTTTGCCAAATGGCT
CTACAAACTACTCAAGTTAAAAGTTCTTCCACCAGATGTTTATGAATTTTTCAAAGCAGC
AATTGTAAACGTCATGAAAGAGAGAGAAGAAAAAGGAATTTTTAGACCTGACGTAATCGA
ACTGTTAATGCGAGCTAAACGTGGACAATTAGCAGCTGCAGATAAAAATAATGAAGTCAA
TGAAGCTGAGTTGTCGAATTTTTCAGCAAATCCTGAATATGAAGTGAAATCGAAAAATTC
AATTATTTGGACTGATGATCATTTCATTGCACAAGGTCATCTATTTTTCTCTGCTGGTCT
CGCAACTTCATCAGTTGTTCTTGAAACAGTTGCTTACTATCTTGCAGTGAATAAAAATTA
TCAAAATGAAATAATCAAAGAAGTCGATGCAGTTGAAAATCCAACTTATGAAGCAATTCA
TAAAATGAAATTTCTTGACATGTTTATCAGTGAAGTTTTGAGACTTTGGGCTTCACCATT
TTTGAATAGAGAATGTAATAAGGATTATAAAATGGATTTTGGTGATGGAATTGTTATAAA
TGTAAAAAATGGCGATTTTGTTCAATTTCCTGTTTGGTCAATTCATCATGATGAAAAATA
TTTTCCAAATCCAGAAGTTTTTGATCCTTATCGATTTAGTGATGAAAGAAAAGGAGAAAT
TTTGAATTATTATATGCCATTCGGTATTGGACCAAGAATTTGTATTGCTTCACGTTTTGC
ATTGATGGAAGTAAAAGTGCTAATTTTTAAAATTTTATCAAAGTTTACTTTTGAAGCATG
TGAAAAAACACCAAAGAAATTGAAAGCAAAACCAAGTTTAACAGAATTTCAATTTACCGA
AGATATTATTGTCGAATTGAAACCAAGGGATGGAAAATAA

>g15556.t7 Gene=g15556 Length=317
MVQKIIKPPSSGIFKILIFVFAKWLYKLLKLKVLPPDVYEFFKAAIVNVMKEREEKGIFR
PDVIELLMRAKRGQLAAADKNNEVNEAELSNFSANPEYEVKSKNSIIWTDDHFIAQGHLF
FSAGLATSSVVLETVAYYLAVNKNYQNEIIKEVDAVENPTYEAIHKMKFLDMFISEVLRL
WASPFLNRECNKDYKMDFGDGIVINVKNGDFVQFPVWSIHHDEKYFPNPEVFDPYRFSDE
RKGEILNYYMPFGIGPRICIASRFALMEVKVLIFKILSKFTFEACEKTPKKLKAKPSLTE
FQFTEDIIVELKPRDGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g15556.t7 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 317 1.8E-65
2 g15556.t7 PANTHER PTHR24292:SF91 CYP9F3-RELATED 11 312 1.1E-80
3 g15556.t7 PANTHER PTHR24292 CYTOCHROME P450 11 312 1.1E-80
6 g15556.t7 PRINTS PR00385 P450 superfamily signature 123 140 5.7E-8
11 g15556.t7 PRINTS PR00465 E-class P450 group IV signature 167 183 4.8E-15
5 g15556.t7 PRINTS PR00385 P450 superfamily signature 172 183 5.7E-8
10 g15556.t7 PRINTS PR00465 E-class P450 group IV signature 220 238 4.8E-15
9 g15556.t7 PRINTS PR00465 E-class P450 group IV signature 243 259 4.8E-15
7 g15556.t7 PRINTS PR00385 P450 superfamily signature 250 259 5.7E-8
4 g15556.t7 PRINTS PR00385 P450 superfamily signature 259 270 5.7E-8
8 g15556.t7 PRINTS PR00465 E-class P450 group IV signature 259 277 4.8E-15
1 g15556.t7 Pfam PF00067 Cytochrome P450 34 296 1.3E-49
15 g15556.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
19 g15556.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 29 -
17 g15556.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 30 118 -
18 g15556.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 119 141 -
16 g15556.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 142 317 -
13 g15556.t7 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 252 261 -
12 g15556.t7 SUPERFAMILY SSF48264 Cytochrome P450 17 314 1.44E-58

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values