General information for g15557.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Palmitoyl-protein thioesterase 1.
Parent gene
- The parent gene g15557 is located on chr_4: 5852783..5854008 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15557 | g15557.t2 | TTS | g15557.t2 | 5852679 | 5852679 |
| chr_4 | g15557 | g15557.t2 | isoform | g15557.t2 | 5852783 | 5853345 |
| chr_4 | g15557 | g15557.t2 | exon | g15557.t2.exon1 | 5852783 | 5853345 |
| chr_4 | g15557 | g15557.t2 | cds | g15557.t2.CDS1 | 5852783 | 5853214 |
| chr_4 | g15557 | g15557.t2 | TSS | g15557.t2 | 5854030 | 5854030 |
Sequences
>g15557.t2 Gene=g15557 Length=563
GTGCTTTAGTGCAAAGATGTCCAGCTGCAAAAGTCAAAAATTTGATCTCACTTGGTGGTC
AGCATCAAGGTGTTTATGGACTTCCAAACTGTCCATCATTGACCACAAAATCATGTGAAT
ACTTTCGTGAAATGTTAAATTATGCTGCTTATACTGGTTGGGTTCAAAAGCGACTCGTGC
AAGCCACTTATTGGCATGATCCAATGAATGAAAATTTGTATAAAAGTAAAAGTACTTTTT
TGGCTGAAATTAATAATGAAAGAAAAATCAATCAAAAATATATTGATAGACTACAGAAGC
TTGAAAATTTTGTGATGGTTAAATTTTGGAATGACACAATTGTTCAACCAGTTGATACAC
AATGGTTTGGTTTTTATAAGCCAGGCAGTGACAGTGAAACATTGACAATGGAAGAGAGCG
ATATTTACACCAAAGATCGACTTGGATTGAAGAAAATGAAAGAGGACGGAAAGATCAAGT
TCATTGCGGTTGAAGGCAATCATTTGCAAATTAAGAACGATTGGTTTATTGCTAATATCA
TTGATGTTTATTTGAAGAACTAA
>g15557.t2 Gene=g15557 Length=143
MLNYAAYTGWVQKRLVQATYWHDPMNENLYKSKSTFLAEINNERKINQKYIDRLQKLENF
VMVKFWNDTIVQPVDTQWFGFYKPGSDSETLTMEESDIYTKDRLGLKKMKEDGKIKFIAV
EGNHLQIKNDWFIANIIDVYLKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15557.t2 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 143 | 0 |
| 2 | g15557.t2 | PANTHER | PTHR11247 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 | 1 | 142 | 0 |
| 3 | g15557.t2 | PANTHER | PTHR11247:SF8 | PALMITOYL-PROTEIN THIOESTERASE 1 | 1 | 142 | 0 |
| 6 | g15557.t2 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 20 | 39 | 0 |
| 5 | g15557.t2 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 72 | 90 | 0 |
| 4 | g15557.t2 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 117 | 135 | 0 |
| 1 | g15557.t2 | Pfam | PF02089 | Palmitoyl protein thioesterase | 4 | 124 | 0 |
| 7 | g15557.t2 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 1 | 138 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0098599 | palmitoyl hydrolase activity | MF |
| GO:0008474 | palmitoyl-(protein) hydrolase activity | MF |
| GO:0002084 | protein depalmitoylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
