General information for g15557.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Palmitoyl-protein thioesterase 1.
Parent gene
- The parent gene g15557 is located on chr_4: 5852783..5854008 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15557 | g15557.t3 | TTS | g15557.t3 | 5852679 | 5852679 |
| chr_4 | g15557 | g15557.t3 | isoform | g15557.t3 | 5852783 | 5853868 |
| chr_4 | g15557 | g15557.t3 | exon | g15557.t3.exon1 | 5852783 | 5853436 |
| chr_4 | g15557 | g15557.t3 | cds | g15557.t3.CDS1 | 5852783 | 5853436 |
| chr_4 | g15557 | g15557.t3 | exon | g15557.t3.exon2 | 5853547 | 5853868 |
| chr_4 | g15557 | g15557.t3 | cds | g15557.t3.CDS2 | 5853547 | 5853714 |
| chr_4 | g15557 | g15557.t3 | TSS | g15557.t3 | 5854030 | 5854030 |
Sequences
>g15557.t3 Gene=g15557 Length=976
ATGAGATCAACACCAATTTTGTTGCTCATCATAGTGCTGATCTCAACAATTTATGGTAAT
AATGTGACACAGAATTACACTCCAATTGTGGTAAGTAAATCAATTTGAAGGTTGAAAGTG
AGCGAAATAGAAAAAAATTTCTTCTTATTTTCAGATGTGGCATGGTATGGGTGACTCATG
TTGCTTTCCATTCTCACTTGGTTCAATTAAAAAACTATTGGAGAGGTCATTAGAAAATAA
AGTTTATGTCACATCGTTGGAAATTGGTGGGAGTTATGTGAGAGATTATGAATCAGGCTA
TTTTATTCATCCTGATAAGCAACTTCAAGATGCATGCAACCAAATAGCAAACAATAAAAT
TCTTTCAAACGGCTTCAATGCAATTGGTTTCTCACAAGGTTCACAATTTTTACGTGCTTT
AGTGCAAAGATGTCCAGCTGCAAAAGTCAAAAATTTGATCTCACTTGGTGGTCAGCATCA
AGGTGTTTATGGACTTCCAAACTGTCCATCATTGACCACAAAATCATGTGAATACTTTCG
TGAAATGTTAAATTATGCTGCTTATACTGGTTGGGTTCAAAAGCGACTCGTGCAAGCCAC
TTATTGGCATGATCCAATGAATGAAAATTTGTATAAAAGTAAAAGTACTTTTTTGGCTGA
AATTAATAATGAAAGAAAAATCAATCAAAAATATATTGATAGACTACAGAAGCTTGAAAA
TTTTGTGATGGTTAAATTTTGGAATGACACAATTGTTCAACCAGTTGATACACAATGGTT
TGGTTTTTATAAGCCAGGCAGTGACAGTGAAACATTGACAATGGAAGAGAGCGATATTTA
CACCAAAGATCGACTTGGATTGAAGAAAATGAAAGAGGACGGAAAGATCAAGTTCATTGC
GGTTGAAGGCAATCATTTGCAAATTAAGAACGATTGGTTTATTGCTAATATCATTGATGT
TTATTTGAAGAACTAA
>g15557.t3 Gene=g15557 Length=273
MWHGMGDSCCFPFSLGSIKKLLERSLENKVYVTSLEIGGSYVRDYESGYFIHPDKQLQDA
CNQIANNKILSNGFNAIGFSQGSQFLRALVQRCPAAKVKNLISLGGQHQGVYGLPNCPSL
TTKSCEYFREMLNYAAYTGWVQKRLVQATYWHDPMNENLYKSKSTFLAEINNERKINQKY
IDRLQKLENFVMVKFWNDTIVQPVDTQWFGFYKPGSDSETLTMEESDIYTKDRLGLKKMK
EDGKIKFIAVEGNHLQIKNDWFIANIIDVYLKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g15557.t3 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 273 | 0 |
| 2 | g15557.t3 | PANTHER | PTHR11247 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 | 1 | 272 | 0 |
| 3 | g15557.t3 | PANTHER | PTHR11247:SF8 | PALMITOYL-PROTEIN THIOESTERASE 1 | 1 | 272 | 0 |
| 9 | g15557.t3 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 31 | 50 | 0 |
| 4 | g15557.t3 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 71 | 87 | 0 |
| 5 | g15557.t3 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 116 | 135 | 0 |
| 7 | g15557.t3 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 150 | 169 | 0 |
| 8 | g15557.t3 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 202 | 220 | 0 |
| 6 | g15557.t3 | PRINTS | PR00414 | Palmitoyl protein thioesterase signature | 247 | 265 | 0 |
| 1 | g15557.t3 | Pfam | PF02089 | Palmitoyl protein thioesterase | 1 | 254 | 0 |
| 10 | g15557.t3 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 1 | 268 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0098599 | palmitoyl hydrolase activity | MF |
| GO:0008474 | palmitoyl-(protein) hydrolase activity | MF |
| GO:0002084 | protein depalmitoylation | BP |
KEGG
Orthology
- This transcript has been annotated with K01074 (palmitoyl-protein thioesterase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
