General information for g15572.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g15572 is located on chr_4: 5897478..5900151 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15572 | g15572.t2 | TTS | g15572.t2 | 5897454 | 5897454 |
| chr_4 | g15572 | g15572.t2 | isoform | g15572.t2 | 5897478 | 5899453 |
| chr_4 | g15572 | g15572.t2 | exon | g15572.t2.exon1 | 5897478 | 5897595 |
| chr_4 | g15572 | g15572.t2 | cds | g15572.t2.CDS1 | 5897478 | 5897595 |
| chr_4 | g15572 | g15572.t2 | exon | g15572.t2.exon2 | 5897649 | 5897906 |
| chr_4 | g15572 | g15572.t2 | cds | g15572.t2.CDS2 | 5897649 | 5897906 |
| chr_4 | g15572 | g15572.t2 | exon | g15572.t2.exon3 | 5897962 | 5898094 |
| chr_4 | g15572 | g15572.t2 | cds | g15572.t2.CDS3 | 5897962 | 5898094 |
| chr_4 | g15572 | g15572.t2 | exon | g15572.t2.exon4 | 5898151 | 5898302 |
| chr_4 | g15572 | g15572.t2 | cds | g15572.t2.CDS4 | 5898151 | 5898302 |
| chr_4 | g15572 | g15572.t2 | exon | g15572.t2.exon5 | 5899131 | 5899281 |
| chr_4 | g15572 | g15572.t2 | cds | g15572.t2.CDS5 | 5899131 | 5899281 |
| chr_4 | g15572 | g15572.t2 | exon | g15572.t2.exon6 | 5899336 | 5899453 |
| chr_4 | g15572 | g15572.t2 | cds | g15572.t2.CDS6 | 5899336 | 5899453 |
| chr_4 | g15572 | g15572.t2 | TSS | g15572.t2 | 5900182 | 5900182 |
Sequences
>g15572.t2 Gene=g15572 Length=930
ATGATTCCAACACTTGGAAAACACAAGAACACTTATACTTTTTCTAAATCACTAGCAGAA
TATCTTATGTCACAAGAGGGCATTGACTTGCCACTTACGATCGTTAGACCATCAATGGTT
ATTTCAAGTTTGAATGAACCATTTCCTGGATGGATTGATAATTGGGCAGGTCCTTCTCCA
TTTGTATTTATGACAGCAAAAGGTCTTTTCAGACATCCACATATGAGAAGAGATGTAAAA
CTTGATGTTATTCCTGCTGATTTGGTAATGGTTTTGGCTGCTGGATGGAAAGTTGGAACT
GATCCAAATGCAAGAAATTCAGTTCCTGAAATTTACAATTGCACAACAAGCTCGAATAAT
CCAATATTATGTAAAGATTTGTTTCAAGGTTTTGTTGATATAGGAAAAAAATATCCATAC
AGTGACACAATTTGGTATCCAAAAATGAAATTTTATCATTCAGCTTTGGCTTCTCAATTT
TTTTCTTTTGCATATCAAAAAATTCCAGCATATTTTGTTGATTTTGTAATGAAACTTTCA
GGAAAGAAACCAAAGCTCATAAAAACTTTAAACTTCAGTTATAATAACTATAATAATATA
AAATGGGTACCAACAAACAACCTCGTCTTTTATAGTGAAAATCCACAAAAAATTTTAAAT
GCCATGAATCCAAAAGATCTGCAAGTTTTTGACTTTGATGTGAGAAAAATTAATTGGCAA
AAATACATTGAAATCTATCATTTTGGATTACGAAAGCATTTGGCAAATGAAAAATCAGAA
AATTGGCCAGCTTTGAGGAAAAAAGTTCAAAGACTTAAGTACATTCATTACATAGTGACT
GGATCGATGATTGCTGGATCATTGTTTTTACTCTACAAAAGTCAAAATTCATTCCAAAAG
AAAAAGGAAAATAATGAAATAAAGTCTTAA
>g15572.t2 Gene=g15572 Length=309
MIPTLGKHKNTYTFSKSLAEYLMSQEGIDLPLTIVRPSMVISSLNEPFPGWIDNWAGPSP
FVFMTAKGLFRHPHMRRDVKLDVIPADLVMVLAAGWKVGTDPNARNSVPEIYNCTTSSNN
PILCKDLFQGFVDIGKKYPYSDTIWYPKMKFYHSALASQFFSFAYQKIPAYFVDFVMKLS
GKKPKLIKTLNFSYNNYNNIKWVPTNNLVFYSENPQKILNAMNPKDLQVFDFDVRKINWQ
KYIEIYHFGLRKHLANEKSENWPALRKKVQRLKYIHYIVTGSMIAGSLFLLYKSQNSFQK
KKENNEIKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g15572.t2 | CDD | cd09071 | FAR_C | 165 | 254 | 2.50841E-21 |
| 7 | g15572.t2 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 162 | 4.2E-14 |
| 3 | g15572.t2 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 5 | 286 | 4.0E-64 |
| 4 | g15572.t2 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 5 | 286 | 4.0E-64 |
| 1 | g15572.t2 | Pfam | PF07993 | Male sterility protein | 5 | 90 | 2.2E-18 |
| 2 | g15572.t2 | Pfam | PF03015 | Male sterility protein | 165 | 257 | 1.4E-21 |
| 9 | g15572.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 273 | - |
| 10 | g15572.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 274 | 292 | - |
| 8 | g15572.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 293 | 309 | - |
| 6 | g15572.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 6 | 68 | 2.84E-6 |
| 5 | g15572.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 274 | 292 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed