General information for g15574.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Enoyl-CoA delta isomerase 1, mitochondrial.
Parent gene
- The parent gene g15574 is located on chr_4: 5904816..5905798 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15574 | g15574.t1 | isoform | g15574.t1 | 5904816 | 5905798 |
| chr_4 | g15574 | g15574.t1 | exon | g15574.t1.exon1 | 5904816 | 5905270 |
| chr_4 | g15574 | g15574.t1 | cds | g15574.t1.CDS1 | 5904816 | 5905270 |
| chr_4 | g15574 | g15574.t1 | exon | g15574.t1.exon2 | 5905326 | 5905473 |
| chr_4 | g15574 | g15574.t1 | cds | g15574.t1.CDS2 | 5905326 | 5905473 |
| chr_4 | g15574 | g15574.t1 | exon | g15574.t1.exon3 | 5905535 | 5905798 |
| chr_4 | g15574 | g15574.t1 | cds | g15574.t1.CDS3 | 5905535 | 5905798 |
| chr_4 | g15574 | g15574.t1 | TSS | g15574.t1 | NA | NA |
| chr_4 | g15574 | g15574.t1 | TTS | g15574.t1 | NA | NA |
Sequences
>g15574.t1 Gene=g15574 Length=867
ATGAATTCATCAACTTTAAAAAAAGCAACAAAATATTTAAATAATAACACAATTAAACTT
TTAATGAATAATTTTATAAAACATCAATCAAGTACAATGAGTCAAGGGCATGTGATAACT
GAAATAAATGACAAAAGTGGTTTTGCAACAGTAACATTTAATCGTCCACCAGCGAACAGT
TTCAACCTTGAATTTCTACAAGATTTCTTGAAAACACTCGATGAACTTGATCGAAATAAA
TGCAGAGGAATGATCTTAACAAGTTCATCACCAACAACATTTTCTTCAGGTTTGGATTTA
AAGGAATTTTATAATCCAGATGAGAAAAGACTGAAAGAATTGATTGCAACTTATGTGAAT
TGTTGCATTAGACTTTATAGTACATTTTATCCAACAGTAGCTGCAATTAATGGTCACGCA
ATTGCTGGTGGAAGTTTTATGGCAATAAATTGTGAATATCGTGTGATGCTTCCAAATTTT
AGAATAGGAATGAATGAGACACAACTTGGTATGACGATATCAGAAGGTGCAATTTGGATA
ATGACTACTCTTTTGAATCCACGTAATGCTGAAAATGCATTGACATTAGGCAAAATATTT
ACAACAGAAGATGCTAAAAAAATTGGCTTAATTGATGAAATTGCAAATGACAAAGAAGAT
GCAATTGCCAAAAGCCAAGCATTTCTTGAAAGTTATAAGAAAGTTCCAATCGAAACACGT
GGAGCAACAAAACAAATTTTTAGAAAAAAAGGAATTGATTTAATGACAAACAATAGAGAC
AAAGATGTTGATGTTTTTGTGAAACATGTTTTAGATCCAAAATGTCAAAAAATGATTGAA
ATGTTTTTAAATCCTAAGAATAATTAA
>g15574.t1 Gene=g15574 Length=288
MNSSTLKKATKYLNNNTIKLLMNNFIKHQSSTMSQGHVITEINDKSGFATVTFNRPPANS
FNLEFLQDFLKTLDELDRNKCRGMILTSSSPTTFSSGLDLKEFYNPDEKRLKELIATYVN
CCIRLYSTFYPTVAAINGHAIAGGSFMAINCEYRVMLPNFRIGMNETQLGMTISEGAIWI
MTTLLNPRNAENALTLGKIFTTEDAKKIGLIDEIANDKEDAIAKSQAFLESYKKVPIETR
GATKQIFRKKGIDLMTNNRDKDVDVFVKHVLDPKCQKMIEMFLNPKNN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15574.t1 | CDD | cd06558 | crotonase-like | 38 | 230 | 0 |
| 5 | g15574.t1 | Gene3D | G3DSA:3.90.226.10 | - | 35 | 266 | 0 |
| 2 | g15574.t1 | PANTHER | PTHR11941:SF45 | ENOYL-COA DELTA ISOMERASE 1, MITOCHONDRIAL | 26 | 284 | 0 |
| 3 | g15574.t1 | PANTHER | PTHR11941 | ENOYL-COA HYDRATASE-RELATED | 26 | 284 | 0 |
| 1 | g15574.t1 | Pfam | PF00378 | Enoyl-CoA hydratase/isomerase | 45 | 283 | 0 |
| 4 | g15574.t1 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 33 | 285 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed