General information for g15612.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Diamine acetyltransferase 2.
Parent gene
- The parent gene g15612 is located on chr_4: 6071472..6072936 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15612 | g15612.t1 | TSS | g15612.t1 | 6070807 | 6070807 |
| chr_4 | g15612 | g15612.t1 | isoform | g15612.t1 | 6070900 | 6071472 |
| chr_4 | g15612 | g15612.t1 | exon | g15612.t1.exon1 | 6070900 | 6070965 |
| chr_4 | g15612 | g15612.t1 | cds | g15612.t1.CDS1 | 6070900 | 6070965 |
| chr_4 | g15612 | g15612.t1 | exon | g15612.t1.exon2 | 6071023 | 6071472 |
| chr_4 | g15612 | g15612.t1 | cds | g15612.t1.CDS2 | 6071023 | 6071472 |
| chr_4 | g15612 | g15612.t1 | TTS | g15612.t1 | 6071510 | 6071510 |
Sequences
>g15612.t1 Gene=g15612 Length=516
ATGATTACCATAAACATTCGTAAAACATCAGCTGATGATCTTGATGATATTGTTGCTATG
ATTCAAGAATTAGCAAATTTTGAAAAAATGCCAAATGGACCTCAATTGAGTGCTTCTGAT
TTACTTCGTGATGGTAACTTTAATAACAACAATCCAGCACCATTATTTTATAGTTTTGTA
GCTGAAGTTAGTGAAAATAATCAAAAACCAAAAGTTGTCGGTTATTCAATTGGATTTTTT
ACATATTCAACTTGGCAAGGAAAGGCTTATCTTATGGAAGACATTTATGTAAAACCTGAA
TTTAGAATGAATAGTGTAGGCAAAAAACTTTTCATACAAAATGTAAAATTTGCAATTGAT
CAACAATGTAGTCGATTTGACTTCCATGTTTTGGATTGGAATCCAGCTAAAGGATTTTAT
GAGAAACTTGGTGCAGTAAATTTAACACAAAGTGAAGGTTGGGAATTTTTTAGACTTGAT
AGTGAAAAAATGAATGAAGTTGTTCAAATGGAATAA
>g15612.t1 Gene=g15612 Length=171
MITINIRKTSADDLDDIVAMIQELANFEKMPNGPQLSASDLLRDGNFNNNNPAPLFYSFV
AEVSENNQKPKVVGYSIGFFTYSTWQGKAYLMEDIYVKPEFRMNSVGKKLFIQNVKFAID
QQCSRFDFHVLDWNPAKGFYEKLGAVNLTQSEGWEFFRLDSEKMNEVVQME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g15612.t1 | CDD | cd04301 | NAT_SF | 58 | 129 | 0.005551 |
| 5 | g15612.t1 | Gene3D | G3DSA:3.40.630.30 | - | 1 | 171 | 0.000000 |
| 2 | g15612.t1 | PANTHER | PTHR10545 | DIAMINE N-ACETYLTRANSFERASE | 4 | 168 | 0.000000 |
| 3 | g15612.t1 | PANTHER | PTHR10545:SF60 | SPERMIDINE/SPERMINE N(1)-ACETYLTRANSFERASE-LIKE PROTEIN 1 | 4 | 168 | 0.000000 |
| 1 | g15612.t1 | Pfam | PF00583 | Acetyltransferase (GNAT) family | 47 | 144 | 0.000000 |
| 6 | g15612.t1 | ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 4 | 166 | 14.446000 |
| 4 | g15612.t1 | SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 4 | 154 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008080 | N-acetyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00657 (diamine N-acetyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
