General information for g15612.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Diamine acetyltransferase 2.
Parent gene
- The parent gene g15612 is located on chr_4: 6071472..6072936 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15612 | g15612.t2 | TSS | g15612.t2 | 6070807 | 6070807 |
| chr_4 | g15612 | g15612.t2 | isoform | g15612.t2 | 6070900 | 6071472 |
| chr_4 | g15612 | g15612.t2 | exon | g15612.t2.exon1 | 6070900 | 6070965 |
| chr_4 | g15612 | g15612.t2 | exon | g15612.t2.exon2 | 6071030 | 6071472 |
| chr_4 | g15612 | g15612.t2 | cds | g15612.t2.CDS1 | 6071044 | 6071472 |
| chr_4 | g15612 | g15612.t2 | TTS | g15612.t2 | 6071510 | 6071510 |
Sequences
>g15612.t2 Gene=g15612 Length=509
ATGATTACCATAAACATTCGTAAAACATCAGCTGATGATCTTGATGATATTGTTGCTATG
ATTCAACAAATTTTGAAAAAATGCCAAATGGACCTCAATTGAGTGCTTCTGATTTACTTC
GTGATGGTAACTTTAATAACAACAATCCAGCACCATTATTTTATAGTTTTGTAGCTGAAG
TTAGTGAAAATAATCAAAAACCAAAAGTTGTCGGTTATTCAATTGGATTTTTTACATATT
CAACTTGGCAAGGAAAGGCTTATCTTATGGAAGACATTTATGTAAAACCTGAATTTAGAA
TGAATAGTGTAGGCAAAAAACTTTTCATACAAAATGTAAAATTTGCAATTGATCAACAAT
GTAGTCGATTTGACTTCCATGTTTTGGATTGGAATCCAGCTAAAGGATTTTATGAGAAAC
TTGGTGCAGTAAATTTAACACAAAGTGAAGGTTGGGAATTTTTTAGACTTGATAGTGAAA
AAATGAATGAAGTTGTTCAAATGGAATAA
>g15612.t2 Gene=g15612 Length=142
MPNGPQLSASDLLRDGNFNNNNPAPLFYSFVAEVSENNQKPKVVGYSIGFFTYSTWQGKA
YLMEDIYVKPEFRMNSVGKKLFIQNVKFAIDQQCSRFDFHVLDWNPAKGFYEKLGAVNLT
QSEGWEFFRLDSEKMNEVVQME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g15612.t2 | CDD | cd04301 | NAT_SF | 29 | 100 | 0.0040516 |
| 5 | g15612.t2 | Gene3D | G3DSA:3.40.630.30 | - | 1 | 142 | 0.0000000 |
| 2 | g15612.t2 | PANTHER | PTHR10545 | DIAMINE N-ACETYLTRANSFERASE | 1 | 139 | 0.0000000 |
| 3 | g15612.t2 | PANTHER | PTHR10545:SF60 | SPERMIDINE/SPERMINE N(1)-ACETYLTRANSFERASE-LIKE PROTEIN 1 | 1 | 139 | 0.0000000 |
| 1 | g15612.t2 | Pfam | PF00583 | Acetyltransferase (GNAT) family | 28 | 115 | 0.0000000 |
| 6 | g15612.t2 | ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1 | 137 | 11.7290000 |
| 4 | g15612.t2 | SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 23 | 125 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008080 | N-acetyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
