General information for g15626.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Pickpocket protein 28.
Parent gene
- The parent gene g15626 is located on chr_4: 6187230..6189069 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15626 | g15626.t1 | isoform | g15626.t1 | 6187230 | 6189069 |
| chr_4 | g15626 | g15626.t1 | exon | g15626.t1.exon1 | 6187230 | 6188479 |
| chr_4 | g15626 | g15626.t1 | cds | g15626.t1.CDS1 | 6187230 | 6188479 |
| chr_4 | g15626 | g15626.t1 | exon | g15626.t1.exon2 | 6188554 | 6188639 |
| chr_4 | g15626 | g15626.t1 | cds | g15626.t1.CDS2 | 6188554 | 6188639 |
| chr_4 | g15626 | g15626.t1 | exon | g15626.t1.exon3 | 6188939 | 6189069 |
| chr_4 | g15626 | g15626.t1 | cds | g15626.t1.CDS3 | 6188939 | 6189069 |
| chr_4 | g15626 | g15626.t1 | TSS | g15626.t1 | NA | NA |
| chr_4 | g15626 | g15626.t1 | TTS | g15626.t1 | NA | NA |
Sequences
>g15626.t1 Gene=g15626 Length=1467
ATGACAAATTCAAAAATTTCATCATTTGCAAATGAAAGTTCAATTCATGGCATAAAATTT
ATTTTTAATCCTAAAAGTCATAAAATTTCTCGACTTTTGTGGACATTGAGTTTTACTTTG
TCAATTTTTGGCCTCATTTATTATTCAAAAAGTGTTTTTGTCAAATACAATTCAAAACCT
GATTTTGGTGTAAAAATTCAACAAGTCGCAATTTCAAAAATTCCATTTCCAGCAGTCACA
ATTTGTGCACCATTTTTTGCTTCTCCTGAATTTGCAAATTTTAATGAAATTATGAGTAAA
ATTACAAATGATAATGCAACAGAAAAAGAAATAAAATATTTTATAGCAAATTTATTTGCT
TGTGATTCAAAATTCCTTGGAAATTTATTTTTGGAATTTAATTTAACAAATTTTAATATT
GTTGAATTAATTAAAGAAAGTTCAGTAAATCGATTTAAATTTTTAAATATTTGTGAATTT
GAAATGTATCGCAGTGAATGTCACGAAATTTTTACTGATCGTGGAATTTGTTATACCGAA
AATCTTCAACATTTTGAGACTATTTATGATAATAATTCAATCAGTAATGATTTTTATTTT
GAATCTAATCAAAATTCTGAAACAATTTGGTCACTTGATCGTGGATATTTTGATAAATCA
AGTCAAAAAATTCCATTTCGTGCTAATAAGAAAAATATTTTTACCGCAATTATTGCAATG
AAAAATTCAATTGCTGACAATGTCTGCATATCAAATGGAAAAAGTTTCACTTTTATTCTA
CACTTGCCAAATGAAATTCCAACATTTTTTCATGATCAATTTTCATTACCTTATGAAAAT
ATTAAAACTGTCACTTTGACAGCAACAAAATTTAAAGCTGATGAAGAATTGAAAAATTAT
TCACCGAAAATTCGCAGCTGTTATTTTGAAAATGAGAAAAAATTGAAATTTTTTAAAAGT
TATACAAAAAATATTTGTGACCTTGAATGTCTTGCAAATAAAACTCTTGAAATTTGTGGC
TGTGTGAAATTTTCAATGCCAAGGGAAGAAGGCACACCTGTTTGTGGTCTTGATAAAATT
GAGTGTTATTTAGAGGTTATCGATAATTGGCCAGAAGAAGACATTGAGGCGCCTTGTGAT
TGTTTGAAAACATGCAATGATATTGAATATTCAATTAGATATGAAAAATTATCAAATAGT
GAACATATTGAGGCTTTGATAGAAAAAATTGAACAGGAAAATTTAAAAAATGGTACGATA
ACTGAACTTTTTATTGGCTTCAAGGATCACATTGTGACTGAATATGAAACTTTTGTGGCT
TATAAATTACAAAACTTGATTGCTGACATTGGTGGTTTGCTTGGACTTTTCCTTGGATGT
TCAGTGCTTTCTTTAATTGAAATAATTTATTACTTTTATGAAATATTAAAAGGTAAAAGA
AATGCTGCTAATGATGGAAGTTTTTAA
>g15626.t1 Gene=g15626 Length=488
MTNSKISSFANESSIHGIKFIFNPKSHKISRLLWTLSFTLSIFGLIYYSKSVFVKYNSKP
DFGVKIQQVAISKIPFPAVTICAPFFASPEFANFNEIMSKITNDNATEKEIKYFIANLFA
CDSKFLGNLFLEFNLTNFNIVELIKESSVNRFKFLNICEFEMYRSECHEIFTDRGICYTE
NLQHFETIYDNNSISNDFYFESNQNSETIWSLDRGYFDKSSQKIPFRANKKNIFTAIIAM
KNSIADNVCISNGKSFTFILHLPNEIPTFFHDQFSLPYENIKTVTLTATKFKADEELKNY
SPKIRSCYFENEKKLKFFKSYTKNICDLECLANKTLEICGCVKFSMPREEGTPVCGLDKI
ECYLEVIDNWPEEDIEAPCDCLKTCNDIEYSIRYEKLSNSEHIEALIEKIEQENLKNGTI
TELFIGFKDHIVTEYETFVAYKLQNLIADIGGLLGLFLGCSVLSLIEIIYYFYEILKGKR
NAANDGSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g15626.t1 | Gene3D | G3DSA:1.10.287.770 | - | 31 | 469 | 2.7E-48 |
| 12 | g15626.t1 | Gene3D | G3DSA:2.60.470.10 | - | 62 | 439 | 2.7E-48 |
| 13 | g15626.t1 | Gene3D | G3DSA:1.10.3590.10 | - | 95 | 255 | 2.7E-48 |
| 14 | g15626.t1 | Gene3D | G3DSA:1.10.287.820 | - | 299 | 385 | 2.7E-48 |
| 2 | g15626.t1 | PANTHER | PTHR11690:SF222 | ACID-SENSING ION CHANNEL 5 | 2 | 475 | 3.1E-53 |
| 3 | g15626.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 2 | 475 | 3.1E-53 |
| 7 | g15626.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 72 | 88 | 1.8E-10 |
| 6 | g15626.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 321 | 332 | 1.8E-10 |
| 5 | g15626.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 332 | 349 | 1.8E-10 |
| 4 | g15626.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 381 | 401 | 1.8E-10 |
| 9 | g15626.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 437 | 451 | 1.8E-10 |
| 8 | g15626.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 451 | 467 | 1.8E-10 |
| 1 | g15626.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 9 | 471 | 1.3E-65 |
| 17 | g15626.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 31 | - |
| 20 | g15626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 32 | 49 | - |
| 18 | g15626.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 50 | 449 | - |
| 19 | g15626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 450 | 473 | - |
| 16 | g15626.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 474 | 488 | - |
| 10 | g15626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 32 | 54 | - |
| 11 | g15626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 450 | 472 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed