Gene loci information

Transcript annotation

  • This transcript has been annotated as Sterol O-acyltransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1570 g1570.t2 isoform g1570.t2 11922351 11924474
chr_3 g1570 g1570.t2 exon g1570.t2.exon1 11922351 11922878
chr_3 g1570 g1570.t2 cds g1570.t2.CDS1 11922351 11922878
chr_3 g1570 g1570.t2 exon g1570.t2.exon2 11923398 11924060
chr_3 g1570 g1570.t2 cds g1570.t2.CDS2 11923398 11924051
chr_3 g1570 g1570.t2 exon g1570.t2.exon3 11924144 11924474
chr_3 g1570 g1570.t2 TSS g1570.t2 11924636 11924636
chr_3 g1570 g1570.t2 TTS g1570.t2 NA NA

Sequences

>g1570.t2 Gene=g1570 Length=1522
ATGAGTAAAATTGATGATAAAGTTTTAAATGGGATTTTTGAAGATGTGCGTAAATTAAGC
TTAAAGTGCCACGACTTTGAAAAACAATTTATAAATAAAAGTGACAATGGAAAAAGTGAA
GAAAAATCGATGAAAAACAACCGAATGCATTTGCCTGATCGATATTTCCAAGCGAGAAAT
TCAGTTCTAACTGACTTGTTCGAAATTAAACACATTAGTACAATTTATCGAATTTTTATG
GTCATTTTTACACTTTTATTGCTGAATGTTTTTGTTTCGGATTTTGCTGATACTGGAAAA
ATTAATTTAGGACAACAAACAATTATAAAAGTGGATTTGCATGCAATTTTCAATATTTTG
CATTTATCCAGCATTTTTTATTTGGACAAAAGCAACGAGAAAATTCTTTTTACTCAATGG
TCCATTCATTGCAATATGGAATCTTCTTGGAGTGCTCTCAGTCATTGCATACCAAGTTGC
ATTCATTTCATTCTCAACAAAAGCTGTTTTAGATTACAAACTTGGTCCGGCAGCTTCAAT
GGCACTTCTAATGGAAGTTGTAAGATTTATGATGAAATCTCATGCATTTATTCGCTCGAG
TGTTCCACGTGCATTTAAAAAGAAGCCACTGAAGAAAGAAGTGAAATCTTCTGACGATAG
CGAACTAGAATATGACAATGACAATTCTAAAATTAAAATTAACCAAAGTTTGCCAACTTT
CAGGCAATTTTCTTATTTTCTATTTGCACCAACTCTTGTTTATCGTGACAATTATCCACG
AACTCAACAAATTCGATGGCATTTTGTTCTAAAATGTTTTCTCGAAGTGCTCTCATTGTT
GTTTATTTTAAGTTTTCTTTTTGAGAGAACCATGCAACCGACATATTCAACTTTTGGCTC
AAAATTTTATGAAATCGGTGTGAAGGAGCTTACAACATCAGTTTTTAATAGCATGCTACC
AGGATTGCTTTGCTTTTTGTGCGGATTTTATGGTTTACTTCATGCATGGCAGAATGCATT
TGCAGAGCTGCTGCGTTTTGCTGATAGGATGTTCTACTTAGATTGGTGGAATGCAACAAA
TTTTTCAGTCTATTATCGCACATGGAATTCTATCGTTCATGATTGGCTATATTTATACGT
CTACAAGGATCTTTATGAGCATATTTTTAAGAGAAATCGACAAATTTGTCAATTTTTAGT
TTTTAGCATTTCAGCAATTTTCCATGAATACATTTTAGGATTCACATTTCGATTTTTTTA
TCCAGTACTTTTTATAGAATTTCAAGGAATTGGAGTGATTTTATTTTTCTTAATGAGAAA
AGACATGAAATCACTTGGAAATTTTCTTATGTGGATGAGTTTAGCTATTGGAACTGGATT
ATTGTTAAGTTTGTATCATATGGAATATTATGCAAGAGAAAATTGTGAATACGATAAGGA
AAAAATTATCAATTATTTCATTCCAATTAGTTGGTCATGTAATGGACTTAAATATAACAA
AAACTGGAAGCTTCAGTTTTGA

>g1570.t2 Gene=g1570 Length=393
MQFSIFCIYPAFFIWTKATRKFFLLNGPFIAIWNLLGVLSVIAYQVAFISFSTKAVLDYK
LGPAASMALLMEVVRFMMKSHAFIRSSVPRAFKKKPLKKEVKSSDDSELEYDNDNSKIKI
NQSLPTFRQFSYFLFAPTLVYRDNYPRTQQIRWHFVLKCFLEVLSLLFILSFLFERTMQP
TYSTFGSKFYEIGVKELTTSVFNSMLPGLLCFLCGFYGLLHAWQNAFAELLRFADRMFYL
DWWNATNFSVYYRTWNSIVHDWLYLYVYKDLYEHIFKRNRQICQFLVFSISAIFHEYILG
FTFRFFYPVLFIEFQGIGVILFFLMRKDMKSLGNFLMWMSLAIGTGLLLSLYHMEYYARE
NCEYDKEKIINYFIPISWSCNGLKYNKNWKLQF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g1570.t2 PANTHER PTHR10408:SF8 O-ACYLTRANSFERASE 1 373 6.8E-125
3 g1570.t2 PANTHER PTHR10408 STEROL O-ACYLTRANSFERASE 1 373 6.8E-125
25 g1570.t2 PIRSF PIRSF000439 Oat_ACAT_DAG_ARE 2 364 2.7E-94
1 g1570.t2 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 122 352 3.7E-29
13 g1570.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 21 -
24 g1570.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 22 49 -
16 g1570.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 50 60 -
18 g1570.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 61 78 -
12 g1570.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 79 154 -
22 g1570.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 155 174 -
14 g1570.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 175 204 -
19 g1570.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 205 223 -
11 g1570.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 224 281 -
23 g1570.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 282 299 -
15 g1570.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 300 304 -
21 g1570.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 305 324 -
10 g1570.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 325 335 -
20 g1570.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 336 354 -
17 g1570.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 355 393 -
5 g1570.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 51 -
7 g1570.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 151 173 -
6 g1570.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 205 227 -
9 g1570.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 282 299 -
4 g1570.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 303 325 -
8 g1570.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 332 354 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008374 O-acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed