Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sterol O-acyltransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1570 g1570.t3 isoform g1570.t3 11923393 11924474
chr_3 g1570 g1570.t3 exon g1570.t3.exon1 11923393 11924092
chr_3 g1570 g1570.t3 cds g1570.t3.CDS1 11923395 11924092
chr_3 g1570 g1570.t3 exon g1570.t3.exon2 11924144 11924474
chr_3 g1570 g1570.t3 cds g1570.t3.CDS2 11924144 11924474
chr_3 g1570 g1570.t3 TSS g1570.t3 11924636 11924636
chr_3 g1570 g1570.t3 TTS g1570.t3 NA NA

Sequences

>g1570.t3 Gene=g1570 Length=1031
ATGAGTAAAATTGATGATAAAGTTTTAAATGGGATTTTTGAAGATGTGCGTAAATTAAGC
TTAAAGTGCCACGACTTTGAAAAACAATTTATAAATAAAAGTGACAATGGAAAAAGTGAA
GAAAAATCGATGAAAAACAACCGAATGCATTTGCCTGATCGATATTTCCAAGCGAGAAAT
TCAGTTCTAACTGACTTGTTCGAAATTAAACACATTAGTACAATTTATCGAATTTTTATG
GTCATTTTTACACTTTTATTGCTGAATGTTTTTGTTTCGGATTTTGCTGATACTGGAAAA
ATTAATTTAGGACAACAAACAATTATAAAAGGTTTTAGTGGCTTTCAAAATGCTATAAAA
ATTTGGATTTGCATGCAATTTTCAATATTTTGCATTTATCCAGCATTTTTTATTTGGACA
AAAGCAACGAGAAAATTCTTTTTACTCAATGGTCCATTCATTGCAATATGGAATCTTCTT
GGAGTGCTCTCAGTCATTGCATACCAAGTTGCATTCATTTCATTCTCAACAAAAGCTGTT
TTAGATTACAAACTTGGTCCGGCAGCTTCAATGGCACTTCTAATGGAAGTTGTAAGATTT
ATGATGAAATCTCATGCATTTATTCGCTCGAGTGTTCCACGTGCATTTAAAAAGAAGCCA
CTGAAGAAAGAAGTGAAATCTTCTGACGATAGCGAACTAGAATATGACAATGACAATTCT
AAAATTAAAATTAACCAAAGTTTGCCAACTTTCAGGCAATTTTCTTATTTTCTATTTGCA
CCAACTCTTGTTTATCGTGACAATTATCCACGAACTCAACAAATTCGATGGCATTTTGTT
CTAAAATGTTTTCTCGAAGTGCTCTCATTGTTGTTTATTTTAAGTTTTCTTTTTGAGAGA
ACCATGCAACCGACATATTCAACTTTTGGCTCAAAATTTTATGAAATCGGTGTGAAGGAG
CTTACAACATCAGTTTTTAATAGCATGCTACCAGGATTGCTTTGCTTTTTGTGCGGATTT
TATGGTGTAAG

>g1570.t3 Gene=g1570 Length=343
MSKIDDKVLNGIFEDVRKLSLKCHDFEKQFINKSDNGKSEEKSMKNNRMHLPDRYFQARN
SVLTDLFEIKHISTIYRIFMVIFTLLLLNVFVSDFADTGKINLGQQTIIKGFSGFQNAIK
IWICMQFSIFCIYPAFFIWTKATRKFFLLNGPFIAIWNLLGVLSVIAYQVAFISFSTKAV
LDYKLGPAASMALLMEVVRFMMKSHAFIRSSVPRAFKKKPLKKEVKSSDDSELEYDNDNS
KIKINQSLPTFRQFSYFLFAPTLVYRDNYPRTQQIRWHFVLKCFLEVLSLLFILSFLFER
TMQPTYSTFGSKFYEIGVKELTTSVFNSMLPGLLCFLCGFYGV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g1570.t3 PANTHER PTHR10408:SF8 O-ACYLTRANSFERASE 33 343 1.0E-75
2 g1570.t3 PANTHER PTHR10408 STEROL O-ACYLTRANSFERASE 33 343 1.0E-75
21 g1570.t3 PIRSF PIRSF000439 Oat_ACAT_DAG_ARE 8 343 4.1E-48
11 g1570.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 73 -
17 g1570.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 92 -
13 g1570.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 93 118 -
18 g1570.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 119 139 -
9 g1570.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 140 145 -
15 g1570.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 146 173 -
12 g1570.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 174 184 -
19 g1570.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 185 202 -
8 g1570.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 203 278 -
20 g1570.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 279 298 -
14 g1570.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 299 320 -
16 g1570.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 321 342 -
10 g1570.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 343 343 -
5 g1570.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 74 96 -
4 g1570.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 117 139 -
7 g1570.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 154 176 -
3 g1570.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 275 297 -
6 g1570.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 320 342 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008374 O-acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed