General information for g15719.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc finger protein 345.
Parent gene
- The parent gene g15719 is located on chr_4: 6540261..6542143 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15719 | g15719.t1 | isoform | g15719.t1 | 6540261 | 6542143 |
| chr_4 | g15719 | g15719.t1 | exon | g15719.t1.exon1 | 6540261 | 6541097 |
| chr_4 | g15719 | g15719.t1 | cds | g15719.t1.CDS1 | 6540261 | 6541097 |
| chr_4 | g15719 | g15719.t1 | exon | g15719.t1.exon2 | 6541169 | 6541336 |
| chr_4 | g15719 | g15719.t1 | cds | g15719.t1.CDS2 | 6541169 | 6541336 |
| chr_4 | g15719 | g15719.t1 | exon | g15719.t1.exon3 | 6541396 | 6541656 |
| chr_4 | g15719 | g15719.t1 | cds | g15719.t1.CDS3 | 6541396 | 6541656 |
| chr_4 | g15719 | g15719.t1 | exon | g15719.t1.exon4 | 6541713 | 6541759 |
| chr_4 | g15719 | g15719.t1 | cds | g15719.t1.CDS4 | 6541713 | 6541759 |
| chr_4 | g15719 | g15719.t1 | exon | g15719.t1.exon5 | 6541816 | 6541840 |
| chr_4 | g15719 | g15719.t1 | cds | g15719.t1.CDS5 | 6541816 | 6541840 |
| chr_4 | g15719 | g15719.t1 | exon | g15719.t1.exon6 | 6541901 | 6542143 |
| chr_4 | g15719 | g15719.t1 | cds | g15719.t1.CDS6 | 6541901 | 6542143 |
| chr_4 | g15719 | g15719.t1 | TTS | g15719.t1 | 6542156 | 6542156 |
| chr_4 | g15719 | g15719.t1 | TSS | g15719.t1 | NA | NA |
Sequences
>g15719.t1 Gene=g15719 Length=1581
ATGGATTTTATAAATATTTGTCGACTATGTTTAGCTGAAAATCTTCAACTTTTTTCAATT
TTCGATGAATGTGTAGGAACAAAATTAAAATTTAGTGAAATAATCAAAATAATTACTGAA
AATAATTATCAAATTGATGAATTTGATTTGTTATCAAAAAATATTTGTGAAGCATGTAAA
AATTTTTGTTGTGAATTTTTGCGTTTTCGTGAGACAATTTTGACAAGTTTGGAATATCAA
CAAAAGAGTTTGCAACAAAATACAAATAAAGAAGATACACAATATGAAGAAATTATTGTA
AATGAATTAGAAGTTGATTATGAAGATGAACAACGATTGGAGGATGAAGAAAATTTTACA
ACATTAATTGAAATTAGCACAAATGAAGAGATTTTAATTGATGAACTCGATGAATCAAAT
AATGAACAATTAGAAACAGTTTCAAGTGATGAAGAAGACAAAAAAGAGCTCATTCAATGT
CAAAAATGTAACAAAACTTTTACATCAAATCGAAAACTTACAAATCATATGAAACTTCAT
TCAACAAAAGTTCGACTTCATGAATGTAAAGAATGCAAAAGAAAATTCACAAGTGAACTT
CAACTTTCAAGACATGAAGTTATTCATTCAGATTTAATAACACAAATTAAACATGAAAAT
TCATTCCAATGTATTGTTTGTAAATCAATTGCAGCTGATAAACATGAACTTGATGATCAC
ATAAGAGAACATAAATTAAAAATTGAAAATGAAAATATTGAATGCATTTATTGTAAAAAA
TCTTTTTATAAATTTAATGCTTTAATTAGACATCTTAAAAAACATGATGACAATAAAACA
CATTTGTGTACAATCTGCAATAAAACTTTTGCACTTGGACAAGAATTGATTGATCACTTA
AATCGCCATAAAGGAAATTTACCATACACTTGTCATATATGTGGAAAATCTTATTTACAG
TCATCAAAATTAAAAATTCATCTTGAAACACATTCTGATGAAAAAAGTTTCCTCTGTACA
GAATGTGGAAAATCATTCACTCGCAATAGTAATTTAAGGCAGCATCTTTTGAGACATACT
GGCAATAAAAAATACCAATGCAGCCAATGTCCAGCAAAATTTATAAGTAAAGGAAATTTG
AAAGCTCATATGACAGCACATAGCAATGTTAAACCTTTCAAATGTGAAATTTGCGGATCT
TCCTTCACACAATCCTATAGTTTAGTTAAACATAATCGAATTCATACCGGAACTCGTCCA
TTTCCTTGTGATGTTTGTGAAATGCGGTTTTATTCATCTGATCATCTTAAAAGACATTTA
AGAACACACACAGGAGAGAAACCTTATAAATGTGAATTTTGTCAAAAATCATTTGCACAA
AATGGTGATTTAAATAAACACAAAAGAATTCACATAGGTGAAAATACTTATTTTTGTGAC
TGGCCTGATTGCAAAGAAGCTTTTCGATTATTAAGTGAATTAAGAAACCATCACAAAGTA
CATTATGGAAAAGATGGTGAAGAGAATAAAGCAATTGACGATGATAAAAATGTTATTATT
ATGAAGGAAGTTACAGAATAA
>g15719.t1 Gene=g15719 Length=526
MDFINICRLCLAENLQLFSIFDECVGTKLKFSEIIKIITENNYQIDEFDLLSKNICEACK
NFCCEFLRFRETILTSLEYQQKSLQQNTNKEDTQYEEIIVNELEVDYEDEQRLEDEENFT
TLIEISTNEEILIDELDESNNEQLETVSSDEEDKKELIQCQKCNKTFTSNRKLTNHMKLH
STKVRLHECKECKRKFTSELQLSRHEVIHSDLITQIKHENSFQCIVCKSIAADKHELDDH
IREHKLKIENENIECIYCKKSFYKFNALIRHLKKHDDNKTHLCTICNKTFALGQELIDHL
NRHKGNLPYTCHICGKSYLQSSKLKIHLETHSDEKSFLCTECGKSFTRNSNLRQHLLRHT
GNKKYQCSQCPAKFISKGNLKAHMTAHSNVKPFKCEICGSSFTQSYSLVKHNRIHTGTRP
FPCDVCEMRFYSSDHLKRHLRTHTGEKPYKCEFCQKSFAQNGDLNKHKRIHIGENTYFCD
WPDCKEAFRLLSELRNHHKVHYGKDGEENKAIDDDKNVIIMKEVTE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 36 | g15719.t1 | Coils | Coil | Coil | 234 | 254 | - |
| 29 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 134 | 212 | 1.2E-11 |
| 32 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 216 | 276 | 1.6E-8 |
| 28 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 277 | 331 | 9.0E-14 |
| 30 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 332 | 359 | 1.4E-11 |
| 35 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 360 | 389 | 1.6E-9 |
| 34 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 390 | 418 | 2.1E-13 |
| 33 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 419 | 443 | 2.0E-14 |
| 31 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 444 | 469 | 3.1E-16 |
| 27 | g15719.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 470 | 503 | 5.3E-7 |
| 14 | g15719.t1 | PANTHER | PTHR23226:SF176 | CROL ALPHA | 82 | 290 | 6.8E-146 |
| 18 | g15719.t1 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 82 | 290 | 6.8E-146 |
| 15 | g15719.t1 | PANTHER | PTHR23226:SF176 | CROL ALPHA | 218 | 388 | 6.8E-146 |
| 19 | g15719.t1 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 218 | 388 | 6.8E-146 |
| 13 | g15719.t1 | PANTHER | PTHR23226:SF176 | CROL ALPHA | 286 | 430 | 6.8E-146 |
| 17 | g15719.t1 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 286 | 430 | 6.8E-146 |
| 12 | g15719.t1 | PANTHER | PTHR23226:SF176 | CROL ALPHA | 338 | 504 | 6.8E-146 |
| 16 | g15719.t1 | PANTHER | PTHR23226 | ZINC FINGER AND SCAN DOMAIN-CONTAINING | 338 | 504 | 6.8E-146 |
| 1 | g15719.t1 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 6 | 82 | 2.2E-7 |
| 9 | g15719.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 159 | 180 | 2.6E-4 |
| 2 | g15719.t1 | Pfam | PF16622 | zinc-finger C2H2-type | 187 | 208 | 2.1E-5 |
| 5 | g15719.t1 | Pfam | PF13912 | C2H2-type zinc finger | 254 | 275 | 0.0017 |
| 4 | g15719.t1 | Pfam | PF13912 | C2H2-type zinc finger | 281 | 304 | 2.0E-4 |
| 8 | g15719.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 309 | 331 | 0.0014 |
| 10 | g15719.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 338 | 359 | 3.6E-6 |
| 3 | g15719.t1 | Pfam | PF13894 | C2H2-type zinc finger | 365 | 387 | 9.4E-4 |
| 7 | g15719.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 393 | 415 | 1.3E-4 |
| 6 | g15719.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 421 | 443 | 1.7E-4 |
| 11 | g15719.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 449 | 471 | 8.3E-5 |
| 41 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 160 | 180 | - |
| 40 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 189 | 209 | - |
| 39 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 255 | 275 | - |
| 42 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 283 | 303 | - |
| 38 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 311 | 331 | - |
| 45 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 339 | 359 | - |
| 47 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 367 | 387 | - |
| 44 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 395 | 415 | - |
| 43 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 423 | 443 | - |
| 46 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 451 | 471 | - |
| 37 | g15719.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 479 | 501 | - |
| 68 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 158 | 185 | 11.572 |
| 63 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 187 | 210 | 10.637 |
| 62 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 253 | 280 | 10.679 |
| 70 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 281 | 308 | 11.032 |
| 67 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 309 | 336 | 13.505 |
| 69 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 337 | 364 | 15.251 |
| 61 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 365 | 392 | 12.674 |
| 66 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 393 | 420 | 15.916 |
| 65 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 421 | 448 | 15.417 |
| 71 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 449 | 476 | 14.544 |
| 64 | g15719.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 477 | 506 | 11.468 |
| 48 | g15719.t1 | SMART | SM00868 | zf_AD_2 | 6 | 87 | 0.004 |
| 54 | g15719.t1 | SMART | SM00355 | c2h2final6 | 158 | 180 | 9.2E-4 |
| 60 | g15719.t1 | SMART | SM00355 | c2h2final6 | 187 | 209 | 0.022 |
| 58 | g15719.t1 | SMART | SM00355 | c2h2final6 | 222 | 244 | 0.3 |
| 52 | g15719.t1 | SMART | SM00355 | c2h2final6 | 253 | 275 | 0.021 |
| 57 | g15719.t1 | SMART | SM00355 | c2h2final6 | 281 | 303 | 0.19 |
| 56 | g15719.t1 | SMART | SM00355 | c2h2final6 | 309 | 331 | 0.015 |
| 53 | g15719.t1 | SMART | SM00355 | c2h2final6 | 337 | 359 | 0.0017 |
| 51 | g15719.t1 | SMART | SM00355 | c2h2final6 | 365 | 387 | 5.7E-4 |
| 50 | g15719.t1 | SMART | SM00355 | c2h2final6 | 393 | 415 | 0.0018 |
| 49 | g15719.t1 | SMART | SM00355 | c2h2final6 | 421 | 443 | 0.001 |
| 55 | g15719.t1 | SMART | SM00355 | c2h2final6 | 449 | 471 | 1.3E-4 |
| 59 | g15719.t1 | SMART | SM00355 | c2h2final6 | 477 | 501 | 0.019 |
| 20 | g15719.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 79 | 1.85E-6 |
| 26 | g15719.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 158 | 209 | 3.07E-9 |
| 25 | g15719.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 254 | 303 | 1.67E-9 |
| 24 | g15719.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 303 | 355 | 1.17E-16 |
| 23 | g15719.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 345 | 402 | 1.11E-17 |
| 22 | g15719.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 401 | 458 | 5.58E-21 |
| 21 | g15719.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 443 | 497 | 3.42E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K09230 (SCAN domain-containing zinc finger protein)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
