General information for g15719.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15719 is located on chr_4: 6540261..6542143 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15719 | g15719.t2 | isoform | g15719.t2 | 6540261 | 6541097 |
| chr_4 | g15719 | g15719.t2 | exon | g15719.t2.exon1 | 6540261 | 6541097 |
| chr_4 | g15719 | g15719.t2 | cds | g15719.t2.CDS1 | 6540261 | 6541097 |
| chr_4 | g15719 | g15719.t2 | TSS | g15719.t2 | NA | NA |
| chr_4 | g15719 | g15719.t2 | TTS | g15719.t2 | NA | NA |
Sequences
>g15719.t2 Gene=g15719 Length=837
ATGGATTTTATAAATATTTGTCGACTATGTTTAGCTGAAAATCTTCAACTTTTTTCAATT
TTCGATGAATGTGTAGGAACAAAATTAAAATTTAGTGAAATAATCAAAATAATTACTGAA
AATAATTATCAAATTGATGAATTTGATTTGTTATCAAAAAATATTTGTGAAGCATGTAAA
AATTTTTGTTGTGAATTTTTGCGTTTTCGTGAGACAATTTTGACAAGTTTGGAATATCAA
CAAAAGAGTTTGCAACAAAATACAAATAAAGAAGATACACAATATGAAGAAATTATTGTA
AATGAATTAGAAGTTGATTATGAAGATGAACAACGATTGGAGGATGAAGAAAATTTTACA
ACATTAATTGAAATTAGCACAAATGAAGAGATTTTAATTGATGAACTCGATGAATCAAAT
AATGAACAATTAGAAACAGTTTCAAGTGATGAAGAAGACAAAAAAGAGCTCATTCAATGT
CAAAAATGTAACAAAACTTTTACATCAAATCGAAAACTTACAAATCATATGAAACTTCAT
TCAACAAAAGTTCGACTTCATGAATGTAAAGAATGCAAAAGAAAATTCACAAGTGAACTT
CAACTTTCAAGACATGAAGTTATTCATTCAGATTTAATAACACAAATTAAACATGAAAAT
TCATTCCAATGTATTGTTTGTAAATCAATTGCAGCTGATAAACATGAACTTGATGATCAC
ATAAGAGAACATAAATTAAAAATTGAAAATGAAAATATTGAATGCATTTATTGTAAAAAA
TCTTTTTATAAATTTAATGCTTTAATTAGACATCTTAAAAAACATGATGACAATAAA
>g15719.t2 Gene=g15719 Length=279
MDFINICRLCLAENLQLFSIFDECVGTKLKFSEIIKIITENNYQIDEFDLLSKNICEACK
NFCCEFLRFRETILTSLEYQQKSLQQNTNKEDTQYEEIIVNELEVDYEDEQRLEDEENFT
TLIEISTNEEILIDELDESNNEQLETVSSDEEDKKELIQCQKCNKTFTSNRKLTNHMKLH
STKVRLHECKECKRKFTSELQLSRHEVIHSDLITQIKHENSFQCIVCKSIAADKHELDDH
IREHKLKIENENIECIYCKKSFYKFNALIRHLKKHDDNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g15719.t2 | Coils | Coil | Coil | 234 | 254 | - |
| 10 | g15719.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 134 | 212 | 4.2E-12 |
| 9 | g15719.t2 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 216 | 279 | 4.5E-9 |
| 4 | g15719.t2 | PANTHER | PTHR24404:SF41 | ZINC FINGER PROTEIN 501 | 95 | 277 | 1.4E-17 |
| 5 | g15719.t2 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 95 | 277 | 1.4E-17 |
| 1 | g15719.t2 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 6 | 82 | 7.6E-8 |
| 3 | g15719.t2 | Pfam | PF00096 | Zinc finger, C2H2 type | 159 | 180 | 1.2E-4 |
| 2 | g15719.t2 | Pfam | PF13912 | C2H2-type zinc finger | 254 | 275 | 7.6E-4 |
| 13 | g15719.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 160 | 180 | - |
| 12 | g15719.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 189 | 209 | - |
| 14 | g15719.t2 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 255 | 275 | - |
| 22 | g15719.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 158 | 185 | 11.572 |
| 21 | g15719.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 187 | 210 | 10.637 |
| 20 | g15719.t2 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 253 | 279 | 10.803 |
| 15 | g15719.t2 | SMART | SM00868 | zf_AD_2 | 6 | 87 | 0.004 |
| 18 | g15719.t2 | SMART | SM00355 | c2h2final6 | 158 | 180 | 9.2E-4 |
| 19 | g15719.t2 | SMART | SM00355 | c2h2final6 | 187 | 209 | 0.022 |
| 17 | g15719.t2 | SMART | SM00355 | c2h2final6 | 222 | 244 | 0.3 |
| 16 | g15719.t2 | SMART | SM00355 | c2h2final6 | 253 | 275 | 0.021 |
| 6 | g15719.t2 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 79 | 6.56E-7 |
| 8 | g15719.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 158 | 209 | 2.19E-9 |
| 7 | g15719.t2 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 221 | 275 | 5.45E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed