General information for g15722.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase 1.
Parent gene
- The parent gene g15722 is located on chr_4: 6548619..6549572 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15722 | g15722.t1 | isoform | g15722.t1 | 6548619 | 6549572 |
| chr_4 | g15722 | g15722.t1 | exon | g15722.t1.exon1 | 6548619 | 6548942 |
| chr_4 | g15722 | g15722.t1 | cds | g15722.t1.CDS1 | 6548619 | 6548942 |
| chr_4 | g15722 | g15722.t1 | exon | g15722.t1.exon2 | 6548995 | 6549139 |
| chr_4 | g15722 | g15722.t1 | cds | g15722.t1.CDS2 | 6548995 | 6549139 |
| chr_4 | g15722 | g15722.t1 | exon | g15722.t1.exon3 | 6549200 | 6549258 |
| chr_4 | g15722 | g15722.t1 | cds | g15722.t1.CDS3 | 6549200 | 6549258 |
| chr_4 | g15722 | g15722.t1 | exon | g15722.t1.exon4 | 6549315 | 6549363 |
| chr_4 | g15722 | g15722.t1 | cds | g15722.t1.CDS4 | 6549315 | 6549363 |
| chr_4 | g15722 | g15722.t1 | exon | g15722.t1.exon5 | 6549425 | 6549484 |
| chr_4 | g15722 | g15722.t1 | cds | g15722.t1.CDS5 | 6549425 | 6549484 |
| chr_4 | g15722 | g15722.t1 | exon | g15722.t1.exon6 | 6549535 | 6549572 |
| chr_4 | g15722 | g15722.t1 | cds | g15722.t1.CDS6 | 6549535 | 6549572 |
| chr_4 | g15722 | g15722.t1 | TSS | g15722.t1 | NA | NA |
| chr_4 | g15722 | g15722.t1 | TTS | g15722.t1 | NA | NA |
Sequences
>g15722.t1 Gene=g15722 Length=675
ATGTCAAAAGTACCAACTTTTTATTATCATCCATTGAGTCCACCTGTTCGAGCTGTACTA
ATGACAATAAAAGAACTTAACATAGATATTAAACTACATGAAATTGATTTTTTAAAATCT
GAACAAACTTCTGAAGCTTTTACAAAAATCAATCCAGTTCAAACTATTCCAGTACTTGTG
GACGATGACTTAATTATTTGTGACAGTCATGCAATTTGTCTCTATTTGATTGAAAAATTT
GGTAAAAATGATAAGCTTTATCCAAAAGATAATCTTTTTTTACGCACTGTCATTAATGAT
CGTTTGTTCTTCGACGCAAGTTTTCTTTTTCCTCGTGGCTGCAACATTTATATGTTAATA
GTCAACGATGGTTGTGCAGTGATTCCAGAAGAGAACATTGAACAAATGCATCGTGGATAT
CGAATTGTTGAGAATTATTTGTTAAATTCAAAATGGATTGCATCAAACGATCAAATGACT
TTAGCTGATATCGCTATTTTTGCATGGATGGAATGTTATACACAATTAATTACAATCGAA
GTTTATCCTCAACTTACAGCTTGGTTAAATGAAATGAGAAAACTGCCATATTATGAAGAA
GCTAATAAGAAAGGAGCTGAATTCCAATTTAATTGTATTAAAAGTGCACTAGAGAAAAAC
AAACATACACAATAA
>g15722.t1 Gene=g15722 Length=224
MSKVPTFYYHPLSPPVRAVLMTIKELNIDIKLHEIDFLKSEQTSEAFTKINPVQTIPVLV
DDDLIICDSHAICLYLIEKFGKNDKLYPKDNLFLRTVINDRLFFDASFLFPRGCNIYMLI
VNDGCAVIPEENIEQMHRGYRIVENYLLNSKWIASNDQMTLADIAIFAWMECYTQLITIE
VYPQLTAWLNEMRKLPYYEEANKKGAEFQFNCIKSALEKNKHTQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g15722.t1 | CDD | cd03045 | GST_N_Delta_Epsilon | 5 | 78 | 0.0000000 |
| 11 | g15722.t1 | CDD | cd03177 | GST_C_Delta_Epsilon | 95 | 207 | 0.0000000 |
| 8 | g15722.t1 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 83 | 0.0000000 |
| 7 | g15722.t1 | Gene3D | G3DSA:1.20.1050.10 | - | 84 | 224 | 0.0000000 |
| 3 | g15722.t1 | PANTHER | PTHR43969:SF4 | FI01423P-RELATED | 1 | 219 | 0.0000000 |
| 4 | g15722.t1 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 219 | 0.0000000 |
| 2 | g15722.t1 | Pfam | PF13417 | Glutathione S-transferase, N-terminal domain | 8 | 82 | 0.0000000 |
| 1 | g15722.t1 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 130 | 196 | 0.0000002 |
| 10 | g15722.t1 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 3 | 84 | 23.2880000 |
| 9 | g15722.t1 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 91 | 223 | 12.8450000 |
| 13 | g15722.t1 | SFLD | SFLDG01153 | Main.4: Theta-like | 5 | 218 | 0.0000000 |
| 14 | g15722.t1 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 5 | 218 | 0.0000000 |
| 5 | g15722.t1 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 5 | 89 | 0.0000000 |
| 6 | g15722.t1 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 75 | 204 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K00799 (glutathione S-transferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed