General information for g15749.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative RanBP-type and C3HC4-type zinc finger-containing protein 1.
Parent gene
- The parent gene g15749 is located on chr_4: 6649858..6650505 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15749 | g15749.t1 | TTS | g15749.t1 | 6649832 | 6649832 |
| chr_4 | g15749 | g15749.t1 | isoform | g15749.t1 | 6649858 | 6650505 |
| chr_4 | g15749 | g15749.t1 | exon | g15749.t1.exon1 | 6649858 | 6650505 |
| chr_4 | g15749 | g15749.t1 | cds | g15749.t1.CDS1 | 6649858 | 6650505 |
| chr_4 | g15749 | g15749.t1 | TSS | g15749.t1 | NA | NA |
Sequences
>g15749.t1 Gene=g15749 Length=648
ATGTCAAAAACTCTTGAATCACTTGATGATTTTGAATATCTCGAAAATTTAGAAAGTTTC
AACTGTCAAATTTGTCTTTCAACAATTCAACCAAGTGATGGAATAAAACTAAAAAATTGC
TTTCATGAATTTTGTAAAATTTGTTTTACAAACGTCATCAAAACATCAACAGAAATTGAA
ATTCAATGTCCATTTATTGAAAATTCAAATCAACGTTGTGAAGCTTTCATACAAGATCGC
GAACTTCGCTGTTTTTTGACAGTAGATGAATATTCAAAACATCTTAATAAATCACTGTCA
CAAGCTGAAAGTCAAATTAAGGGAGCATTTCATTGCCTGACACCAAACTGTATTGGTTGG
GTTGAAATTTTGAATAATTTAAAAAATTTTACTTGCATTGTTTGTAAAAATGTCAATTGT
GTCAAATGCAAGTCAATTCATACTGGAACAGTTTGTAAAAATCTACAAAATGTCAACAAC
AAGTCACAAATTTACATCAATCAATTATTAAGAGAACAAAAAGTCATGAAGTGCACAAAG
TGTGGAATTTTAGTTCAAAAAATCAATGGATGCAATCATTTAAAATGTCTGAAATGTAAA
AATGAATTTCAATGGATTGGAAAATCTGGTTTTGAAAGATATCAATAA
>g15749.t1 Gene=g15749 Length=215
MSKTLESLDDFEYLENLESFNCQICLSTIQPSDGIKLKNCFHEFCKICFTNVIKTSTEIE
IQCPFIENSNQRCEAFIQDRELRCFLTVDEYSKHLNKSLSQAESQIKGAFHCLTPNCIGW
VEILNNLKNFTCIVCKNVNCVKCKSIHTGTVCKNLQNVNNKSQIYINQLLREQKVMKCTK
CGILVQKINGCNHLKCLKCKNEFQWIGKSGFERYQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15749.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 16 | 107 | 0.0000000 |
| 7 | g15749.t1 | Gene3D | G3DSA:1.20.120.1750 | - | 141 | 214 | 0.0000067 |
| 2 | g15749.t1 | PANTHER | PTHR22770:SF32 | HELICASE CONSERVED C-TERMINAL DOMAIN CONTAINING PROTEIN | 7 | 206 | 0.0000000 |
| 3 | g15749.t1 | PANTHER | PTHR22770 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED | 7 | 206 | 0.0000000 |
| 1 | g15749.t1 | Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 22 | 64 | 0.0000370 |
| 10 | g15749.t1 | ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 18 | 215 | 20.9560000 |
| 9 | g15749.t1 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 22 | 67 | 10.1440000 |
| 5 | g15749.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 18 | 94 | 0.0000000 |
| 6 | g15749.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 94 | 156 | 0.0000004 |
| 4 | g15749.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 164 | 203 | 0.0000001 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046872 | metal ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
