General information for g15755.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial.
Parent gene
- The parent gene g15755 is located on chr_4: 6670005..6672077 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15755 | g15755.t15 | TSS | g15755.t15 | 6669926 | 6669926 |
| chr_4 | g15755 | g15755.t15 | isoform | g15755.t15 | 6670005 | 6672077 |
| chr_4 | g15755 | g15755.t15 | exon | g15755.t15.exon1 | 6670005 | 6670073 |
| chr_4 | g15755 | g15755.t15 | cds | g15755.t15.CDS1 | 6670005 | 6670073 |
| chr_4 | g15755 | g15755.t15 | exon | g15755.t15.exon2 | 6670261 | 6670474 |
| chr_4 | g15755 | g15755.t15 | cds | g15755.t15.CDS2 | 6670261 | 6670474 |
| chr_4 | g15755 | g15755.t15 | exon | g15755.t15.exon3 | 6670535 | 6671440 |
| chr_4 | g15755 | g15755.t15 | cds | g15755.t15.CDS3 | 6670535 | 6671440 |
| chr_4 | g15755 | g15755.t15 | exon | g15755.t15.exon4 | 6671497 | 6671567 |
| chr_4 | g15755 | g15755.t15 | cds | g15755.t15.CDS4 | 6671497 | 6671567 |
| chr_4 | g15755 | g15755.t15 | exon | g15755.t15.exon5 | 6671724 | 6671783 |
| chr_4 | g15755 | g15755.t15 | exon | g15755.t15.exon6 | 6671844 | 6672077 |
| chr_4 | g15755 | g15755.t15 | TTS | g15755.t15 | 6672229 | 6672229 |
Sequences
>g15755.t15 Gene=g15755 Length=1554
ATGCTGATAAAGTGTTCAAATTTCTTGTTAAATTCTAAAAATTTTCGAATTTCATTGAAT
CATTTAAAGATCTTCACATGTTCACTCTCAACATCGTCAGTAGTTCAAAGTAAAGCATAT
AAAGGAAAAATTTATAGTTCAACACAAGATGCTGTTGATGATATACCAAATGGATCGAAA
CTTTTAGTTGGTGGTTTTGGTTTATGTGGAATTCCTGAAAATCTCATTCAAGCTCTTTTA
GATACCGGAAAAAAAGATTTAACAATTGTTTCTAATAATGCTGGTGTTGACAATTTCGGT
CTCGGTCTTTTACTAAAAGATCGTCGAATTAAGCGCATGATTGCTTCCTATGTTGGTGAA
AATGCTGAATTTGAGCGGCAATATCTTTCAGGTGAGCTTGAACTTGAATTGACCCCTCAA
GGAACACTTGCCGAGAGAATCAGAGCAGGTGGTGCAGGCATCCCTGCATTTTTTACTCCA
ACTGGCTACGGCACACTTGTTCATGAAGGTGGTTCACCTATTAAATATGGTGAAAATGGT
AAAATTGCAATTCATAGTCAACCACGTGAACTTCGTGAATTTAATGGAATTCCTTACATA
ATGGAAGAAGCTATAACTGGCGATTATGCTTTAGTTCGAGCTTACAAAGCTGATGAAATG
GGAAATTTAATTTTTCGAAAATCAGCGAGAAATTTCAATCCGACAATGTGCAAAGCAGCT
AAAGTCACAATTGCTGAAGTTGAAGAAATTGTCCCAGTTGGTTCACTCCAACCTGATGAA
ATTCATATACCGAGCATTTTTGTGCACCGCATTGTAAGAACAAAACTTGAGAAAAGAATT
GAAAGATTGCAAATTAGTCGACCTGATGGAAAACCATCAAAAACTGCAAAATCAAGAGAA
AGAATTGCAAGAAGAGTTGTATGTGAATTTAAAGATGGAATGAATGTCAATCTAGGCATT
GGTATTCCAGTATTATCAAGCAATTATATCCCAAATGATATTACAGTTCATTTACAATCA
GAAAATGGTGTACTTGGACTTGGACCTTTTCCAGAAGAACATATGGTTGATGCTGACATG
ATAAATGCTGGTAAAGAAACTGTCACGTTAATTACTGGAGCATCAATTTTTTCTTCTGAT
GAATCTTTTGCAATGATTAGAGGTGGTCACATGGACATTACAGTGTTAGGTGCTATGGAA
GTTTCTCAATATGGTGATTTAGCTAATTGGATGATTCCTGGTAAGCGAAATTATTTTTAA
GGCATGGGCGGAGCAATGGATTTAGTAGCAGCACCTGGAACAAAAACAATCATCACAATG
GAACACAACAGCAAAGATGGAGCGCCAAAAATTCTCAGTGAATGTTCATTGCCATTGACT
GGTAAAAATTGTGTTGACATGATTGTCACTGAGAAAGCAGTTTTCAATGTTGATAAAGAA
AAAGGATTAACTTTGATTGAAATTGCTGAAGATATCACATTAGAGCAGCTAATTGCAGCA
ACTGGATGTGAATTTAAAGTTGCTGATGACCTGAAACCAATGCAGCAAGTGTGA
>g15755.t15 Gene=g15755 Length=419
MLIKCSNFLLNSKNFRISLNHLKIFTCSLSTSSVVQSKAYKGKIYSSTQDAVDDIPNGSK
LLVGGFGLCGIPENLIQALLDTGKKDLTIVSNNAGVDNFGLGLLLKDRRIKRMIASYVGE
NAEFERQYLSGELELELTPQGTLAERIRAGGAGIPAFFTPTGYGTLVHEGGSPIKYGENG
KIAIHSQPRELREFNGIPYIMEEAITGDYALVRAYKADEMGNLIFRKSARNFNPTMCKAA
KVTIAEVEEIVPVGSLQPDEIHIPSIFVHRIVRTKLEKRIERLQISRPDGKPSKTAKSRE
RIARRVVCEFKDGMNVNLGIGIPVLSSNYIPNDITVHLQSENGVLGLGPFPEEHMVDADM
INAGKETVTLITGASIFSSDESFAMIRGGHMDITVLGAMEVSQYGDLANWMIPGKRNYF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g15755.t15 | Gene3D | G3DSA:3.40.1080.10 | - | 42 | 274 | 7.0E-111 |
| 10 | g15755.t15 | Gene3D | G3DSA:3.40.1080.10 | - | 294 | 417 | 2.5E-57 |
| 3 | g15755.t15 | PANTHER | PTHR13707 | KETOACID-COENZYME A TRANSFERASE | 22 | 415 | 1.5E-191 |
| 4 | g15755.t15 | PANTHER | PTHR13707:SF30 | SUCCINYL-COA:3-KETOACID COENZYME A TRANSFERASE 1, MITOCHONDRIAL | 22 | 415 | 1.5E-191 |
| 2 | g15755.t15 | Pfam | PF01144 | Coenzyme A transferase | 47 | 273 | 4.4E-77 |
| 1 | g15755.t15 | Pfam | PF01144 | Coenzyme A transferase | 300 | 413 | 1.1E-24 |
| 9 | g15755.t15 | ProSitePatterns | PS01273 | Coenzyme A transferases signature 1. | 57 | 72 | - |
| 8 | g15755.t15 | ProSitePatterns | PS01274 | Coenzyme A transferases signature 2. | 338 | 346 | - |
| 6 | g15755.t15 | SMART | SM00882 | CoA_trans_3 | 45 | 274 | 8.4E-91 |
| 7 | g15755.t15 | SMART | SM00882 | CoA_trans_3 | 300 | 417 | 1.2E-5 |
| 5 | g15755.t15 | SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | 43 | 343 | 4.19E-97 |
| 12 | g15755.t15 | TIGRFAM | TIGR02429 | pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit | 43 | 274 | 1.0E-77 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008410 | CoA-transferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01028 (3-oxoacid CoA-transferase subunit A)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
