Gene loci information

Transcript annotation

  • This transcript has been annotated as Aldo-keto reductase family 1 member B10.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15759 g15759.t16 TTS g15759.t16 6681153 6681153
chr_4 g15759 g15759.t16 isoform g15759.t16 6682048 6683765
chr_4 g15759 g15759.t16 exon g15759.t16.exon1 6682048 6682643
chr_4 g15759 g15759.t16 cds g15759.t16.CDS1 6682050 6682643
chr_4 g15759 g15759.t16 exon g15759.t16.exon2 6683697 6683765
chr_4 g15759 g15759.t16 cds g15759.t16.CDS2 6683697 6683765
chr_4 g15759 g15759.t16 TSS g15759.t16 6683881 6683881

Sequences

>g15759.t16 Gene=g15759 Length=665
ATGTCAGTTCCATCAGTAAAATTATCAAATGGTCACAGTATTCCAATTATCGGAATTGGT
ACATGGAAGTCACCTACTGGACAAGTTGAACAAGCAGTAAAGGACGCAATTGATGCCGGC
TATCGTCATATTGATTGTGCTTTTGCTTACTTAAATGAAACTGAAGTAGGCAATGCAATT
GCCGCTAAAATTGCAGATGGAACTATCAAGCGTGAAGATATTTTCATTACTTCAAAACTT
TGGAATATTTTTCATGATCCAAAACTTGTTCGAAGTGCAGTTGAAAAATCATTAAAATTT
TTAAAACTTGATTATTTGGATCTTTACTTGATTCATTGGCCAATGGGTTATGCTTATTTG
AATAATGGTGAAACATTATTCCCTAAAAATGAGAAAGAAGAATGGATTTTCTCAGAAGTT
GATTATGTCGACACATGGAAAGCAATGGAGGAATTAGTTGAAGCTGGATTAGTAAAATCA
ATTGGTCTGAGCAATTTCAATTCAAAACAAATCGAACGTGTACTGGCTGTAGCTAAAATC
AAACCAGTAATGAACCAAGTTGAATGCCATCCTTATTTGACACAGAAGAAATTAATTGAA
TTCTGTCGTAGTAAAGGCATTGCTGTTACTGCATATTCACCACTGGGGTCTAACGACCGT
CCTTG

>g15759.t16 Gene=g15759 Length=221
MSVPSVKLSNGHSIPIIGIGTWKSPTGQVEQAVKDAIDAGYRHIDCAFAYLNETEVGNAI
AAKIADGTIKREDIFITSKLWNIFHDPKLVRSAVEKSLKFLKLDYLDLYLIHWPMGYAYL
NNGETLFPKNEKEEWIFSEVDYVDTWKAMEELVEAGLVKSIGLSNFNSKQIERVLAVAKI
KPVMNQVECHPYLTQKKLIEFCRSKGIAVTAYSPLGSNDRP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g15759.t16 Gene3D G3DSA:3.20.20.100 - 1 221 2.2E-99
2 g15759.t16 PANTHER PTHR11732:SF482 ZGC:56622 4 219 1.1E-94
3 g15759.t16 PANTHER PTHR11732 ALDO/KETO REDUCTASE 4 219 1.1E-94
4 g15759.t16 PRINTS PR00069 Aldo-keto reductase signature 36 60 8.1E-46
5 g15759.t16 PRINTS PR00069 Aldo-keto reductase signature 96 114 8.1E-46
6 g15759.t16 PRINTS PR00069 Aldo-keto reductase signature 149 166 8.1E-46
7 g15759.t16 PRINTS PR00069 Aldo-keto reductase signature 183 212 8.1E-46
1 g15759.t16 Pfam PF00248 Aldo/keto reductase family 17 217 7.9E-45
10 g15759.t16 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 40 57 -
9 g15759.t16 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 149 166 -
8 g15759.t16 SUPERFAMILY SSF51430 NAD(P)-linked oxidoreductase 6 218 8.51E-79

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0047834 D-threo-aldose 1-dehydrogenase activity MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed