Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Aldo-keto reductase family 1 member A1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15759 g15759.t17 TTS g15759.t17 6681153 6681153
chr_4 g15759 g15759.t17 isoform g15759.t17 6682142 6682635
chr_4 g15759 g15759.t17 exon g15759.t17.exon1 6682142 6682635
chr_4 g15759 g15759.t17 cds g15759.t17.CDS1 6682143 6682370
chr_4 g15759 g15759.t17 TSS g15759.t17 NA NA

Sequences

>g15759.t17 Gene=g15759 Length=494
TGGACAAGTTGAACAAGCAGTAAAGGACGCAATTGATGCCGGCTATCGTCATATTGATTG
TGCTTTTGCTTACTTAAATGAAACTGAAGTAGGCAATGCAATTGCCGCTAAAATTGCAGA
TGGAACTATCAAGCGTGAAGATATTTTCATTACTTCAAAACTTTGGAATATTTTTCATGA
TCCAAAACTTGTTCGAAGTGCAGTTGAAAAATCATTAAAATTTTTAAAACTTGATTATTT
GGATCTTTACTTGATTCATTGGCCAATGGGTTATGCTTATTTGAATAATGGTGAAACATT
ATTCCCTAAAAATGAGAAAGAAGAATGGATTTTCTCAGAAGTTGATTATGTCGACACATG
GAAAGCAATGGAGGAATTAGTTGAAGCTGGATTAGTAAAATCAATTGGTCTGAGCAATTT
CAATTCAAAACAAATCGAACGTGTACTGGCTGTAGCTAAAATCAAACCAGTAATGAACCA
AGTTGAATGCCATC

>g15759.t17 Gene=g15759 Length=76
MGYAYLNNGETLFPKNEKEEWIFSEVDYVDTWKAMEELVEAGLVKSIGLSNFNSKQIERV
LAVAKIKPVMNQVECH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g15759.t17 Gene3D G3DSA:3.20.20.100 - 3 76 1.1E-25
2 g15759.t17 PANTHER PTHR11732:SF402 ALDO-KETO REDUCTASE FAMILY 1 MEMBER A1-A 7 76 2.2E-23
3 g15759.t17 PANTHER PTHR11732 ALDO/KETO REDUCTASE 7 76 2.2E-23
5 g15759.t17 PRINTS PR00069 Aldo-keto reductase signature 35 52 4.4E-10
4 g15759.t17 PRINTS PR00069 Aldo-keto reductase signature 69 76 4.4E-10
1 g15759.t17 Pfam PF00248 Aldo/keto reductase family 21 76 6.7E-13
7 g15759.t17 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 35 52 -
6 g15759.t17 SUPERFAMILY SSF51430 NAD(P)-linked oxidoreductase 6 76 2.1E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0047834 D-threo-aldose 1-dehydrogenase activity MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed