General information for g15760.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15760 is located on chr_4: 6685164..6689719 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15760 | g15760.t3 | isoform | g15760.t3 | 6684923 | 6686953 |
| chr_4 | g15760 | g15760.t3 | exon | g15760.t3.exon1 | 6684923 | 6685096 |
| chr_4 | g15760 | g15760.t3 | TSS | g15760.t3 | 6684945 | 6684945 |
| chr_4 | g15760 | g15760.t3 | exon | g15760.t3.exon2 | 6685153 | 6685611 |
| chr_4 | g15760 | g15760.t3 | cds | g15760.t3.CDS1 | 6685164 | 6685611 |
| chr_4 | g15760 | g15760.t3 | exon | g15760.t3.exon3 | 6685678 | 6685827 |
| chr_4 | g15760 | g15760.t3 | cds | g15760.t3.CDS2 | 6685678 | 6685827 |
| chr_4 | g15760 | g15760.t3 | exon | g15760.t3.exon4 | 6685970 | 6686953 |
| chr_4 | g15760 | g15760.t3 | cds | g15760.t3.CDS3 | 6685970 | 6686952 |
| chr_4 | g15760 | g15760.t3 | TTS | g15760.t3 | NA | NA |
Sequences
>g15760.t3 Gene=g15760 Length=1767
TTACATTAATTTTTTTCAATTAAGAAAGACGAAGAAGAATAAAAAAGTTTTTCATAACAA
TTATTTTTAGATTATGAGTGAATAAGTCAGCATTTCTTCAATACCTGATAATTTTTATAC
GTAAAAACTAGTTTAAATAATGCAAAAATCCAAAGAATTTTGAAGAATAAAAAATTCATT
GAAAAATGTCTTGCAATATTTATTATGAAAATTGCAAGGTCAATGTTGAATGGAAGCATC
ATGTCTTAAAAATTTTCGACATTGGAACAGCAAATTTAATTTTGACATTGAAAAATCAGC
TAATTTTTATCAAACGCACTGATAACAGCAGCAACTTGATTAATTTACGAGATAACGTGA
TAGACGCATCGTATAGTTATCCACTCTTCTACATAGTCGATAATAATGGACACGTCTTTA
AAACAAACATTGAACAAATTAGTGAAAATCTTTGGGATGAGATTTTTGTAGAGCAAAATA
TAAAACAAATTTGCGGAAATGGTGATGGAGTGCTAATGATTAGCGAAAATTATGAACTTA
TTGGAATGGGAGATTTTGAAAATGTTTTATGTTCAGTTGAACCAAAGAAGGTTGATTGCT
TTTCTAATATTAACGCCCTTCAAGTTGCAATGGGGGATAATTTTGCTCTTGTTCTTGTTA
CACAACAATTACCAAATGGAAATAATAATTCAATAATTGATAAAAATTTTATGCAAGAAA
CCAGAGAAATTGGAAGAGATTTATTAAAAACCCAAGTTTGGTCATTTGGTTCAATAAATA
AAGGAGCTGGAGATCATGCAAAGCGAAAAGACCATGCTGTGATAGTAAAATTAGTTGATA
TTGGTGTTTATACAATTTCCTGTGGTAGTCATCATGCAGCTGCTTTGACACTTGATGGTC
GACTTTTTTTATGGGGCTTTAATAATCATCAACAAATTTCAATTGACACATCAATTCAAG
ATTTAAGTTCACCAATTGAATTTCGAACAGAGATCAATGGAAAAATGTCAAAAAATGTTC
TTGCAGTTACAACATCAAGTTGCAGCACTGTTATACTCTTCAATGATTTATCATTCAAAG
TTTTAGGCAAAACTGGTGTTTCACAAAATGAAAATGAAGAATTTGCGAGTAGTCTCAAAT
ATGAGCACGATGCAGGAAATGTTGAAGATAATTTTGGCATTTGCAATGTGCCATACATTA
TAAGTCATGGAAAAGTGCTGCTAATTAATAGGAAAAATATTTCCATGTTTCTTCTGACTT
ATATGAATGATGAACAACGTTACAATCGAATCATGGTTAATGCTTATCAAAAATATATGA
TTGGTCTAAAAATGCATGACGATGATTCTTTCAAATTAGTCGAAAGTTTTGAAAATCTTC
TCTACATTGCATTGAGAAATTTAAAAATGATTTTTGACTTGCTCAAGAGTGACAGTGAAC
AAAAACTTGATAGTGCAATTGTAAATATAAATTTTACTGAAGTCATTCGTGAATATCATC
GCTATTTAAAAAATCTCTGTGATATAATTTCATTTTATTCCTATGATCATTATGAAAAGA
AAATTGATCGTAAAATTATAAAAATTGTGCTTGAAAAGCCATTTTCAATGTTGGAAATTT
ATGAAAAATTATTGGATTTGATTTATGATTTGCATCTTTACAACAATAATCCAAACATTT
CAATTCATGATCATGAAATTGAAGAATTAAAAAGACAAACAGTTGAAAGGAAAAAAATTC
TTGAAGATTTTAGAAAAATTGTTGTTC
>g15760.t3 Gene=g15760 Length=527
MSCNIYYENCKVNVEWKHHVLKIFDIGTANLILTLKNQLIFIKRTDNSSNLINLRDNVID
ASYSYPLFYIVDNNGHVFKTNIEQISENLWDEIFVEQNIKQICGNGDGVLMISENYELIG
MGDFENVLCSVEPKKVDCFSNINALQVAMGDNFALVLVTQQLPNGNNNSIIDKNFMQETR
EIGRDLLKTQVWSFGSINKGAGDHAKRKDHAVIVKLVDIGVYTISCGSHHAAALTLDGRL
FLWGFNNHQQISIDTSIQDLSSPIEFRTEINGKMSKNVLAVTTSSCSTVILFNDLSFKVL
GKTGVSQNENEEFASSLKYEHDAGNVEDNFGICNVPYIISHGKVLLINRKNISMFLLTYM
NDEQRYNRIMVNAYQKYMIGLKMHDDDSFKLVESFENLLYIALRNLKMIFDLLKSDSEQK
LDSAIVNINFTEVIREYHRYLKNLCDIISFYSYDHYEKKIDRKIIKIVLEKPFSMLEIYE
KLLDLIYDLHLYNNNPNISIHDHEIEELKRQTVERKKILEDFRKIVV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g15760.t3 | Gene3D | G3DSA:2.130.10.30 | - | 71 | 337 | 9.7E-18 |
| 2 | g15760.t3 | ProSitePatterns | PS00626 | Regulator of chromosome condensation (RCC1) signature 2. | 224 | 234 | - |
| 4 | g15760.t3 | ProSiteProfiles | PS50012 | Regulator of chromosome condensation (RCC1) repeat profile. | 238 | 294 | 9.58 |
| 1 | g15760.t3 | SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 56 | 312 | 1.14E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
