General information for g15761.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15761 is located on chr_4: 6690204..6691040 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15761 | g15761.t1 | isoform | g15761.t1 | 6690204 | 6691040 |
| chr_4 | g15761 | g15761.t1 | exon | g15761.t1.exon1 | 6690204 | 6691040 |
| chr_4 | g15761 | g15761.t1 | cds | g15761.t1.CDS1 | 6690204 | 6691040 |
| chr_4 | g15761 | g15761.t1 | TSS | g15761.t1 | NA | NA |
| chr_4 | g15761 | g15761.t1 | TTS | g15761.t1 | NA | NA |
Sequences
>g15761.t1 Gene=g15761 Length=837
ATGATTTTAAATAAATTTTTAATCTCTTCAGAGAATATTCTTATTACAAATTTTGTTGAT
TTGAAAGTAAGTCTAAATTTGATGTATAATAGCATAAGAGAAATTGACGAAAATTCTTTT
GATGATTTGGTTGAACTGAAATTTCTTTCACTTCAAAATAACGATCTTGAGACAATTGAT
AGAAACTGGTTCAAAAACAATAAAAAGATTGAAATTTTGGATTTTTCACAAAATGGCATT
AAAATTAATGATCCTCAAATTTTTTCAAGTTTGTCGAATCTCAATGCATTGCTTTTAAGT
CAATGTTTTTACATAAAAGAAAACATTCATATTTTAAAAGATTTAACAAATTTGAGATAT
CTTGATTTGCGTGTCAATGAAATTGAAAACTTTAATAATGAAATTTTAAGCAGTTTGCCA
TCACTACAAGAATTAGCACTTGAATACAGTACGATTGGAGAGTTATCTGAAAATCATTTT
GTAAATAATAAAAAGCTCAAAAAGTTGAATTTATTAGGAAATCAAATTAAAGTTCAACCT
GGAACACTCAATGGATTAAAAGAACTTGAAGAAATTTGGTTAAGTAACATCAAATCTGCA
GAAATTTTTCAAAGTCTTTTTAGAGATACAAAAAATTTGAAAATTTTGAAAATAGGAGGA
GGAGAATTTCAGAGACTCACTTCTGCAGATATTGGATTTTTGACAAAACTTGAAAAAATG
CAATCAAATATTAGATTTTTTCTGATATTGATTGTTTCTTATTGCTTTTTCCTTGAACTT
TTTTCATGTGCCCACGCTTATTCATTTATTTACGCACTTATTTCTATTGGATTTTAA
>g15761.t1 Gene=g15761 Length=278
MILNKFLISSENILITNFVDLKVSLNLMYNSIREIDENSFDDLVELKFLSLQNNDLETID
RNWFKNNKKIEILDFSQNGIKINDPQIFSSLSNLNALLLSQCFYIKENIHILKDLTNLRY
LDLRVNEIENFNNEILSSLPSLQELALEYSTIGELSENHFVNNKKLKKLNLLGNQIKVQP
GTLNGLKELEEIWLSNIKSAEIFQSLFRDTKNLKILKIGGGEFQRLTSADIGFLTKLEKM
QSNIRFFLILIVSYCFFLELFSCAHAYSFIYALISIGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g15761.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 108 | 9.3E-16 |
| 8 | g15761.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 109 | 263 | 5.7E-21 |
| 3 | g15761.t1 | PANTHER | PTHR46473:SF8 | ELRR (EXTRACELLULAR LEUCINE-RICH REPEAT) ONLY | 23 | 147 | 2.2E-28 |
| 5 | g15761.t1 | PANTHER | PTHR46473 | GH08155P | 23 | 147 | 2.2E-28 |
| 4 | g15761.t1 | PANTHER | PTHR46473:SF8 | ELRR (EXTRACELLULAR LEUCINE-RICH REPEAT) ONLY | 111 | 230 | 2.2E-28 |
| 6 | g15761.t1 | PANTHER | PTHR46473 | GH08155P | 111 | 230 | 2.2E-28 |
| 1 | g15761.t1 | Pfam | PF13855 | Leucine rich repeat | 49 | 101 | 1.4E-8 |
| 2 | g15761.t1 | Pfam | PF13855 | Leucine rich repeat | 140 | 196 | 3.4E-7 |
| 10 | g15761.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 245 | - |
| 12 | g15761.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 246 | 274 | - |
| 11 | g15761.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 275 | 278 | - |
| 20 | g15761.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 20 | 42 | 5.479 |
| 21 | g15761.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 45 | 66 | 6.21 |
| 25 | g15761.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 69 | 90 | 4.508 |
| 24 | g15761.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 117 | 138 | 7.057 |
| 23 | g15761.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 141 | 162 | 4.578 |
| 22 | g15761.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 165 | 187 | 6.257 |
| 17 | g15761.t1 | SMART | SM00369 | LRR_typ_2 | 18 | 42 | 150.0 |
| 16 | g15761.t1 | SMART | SM00369 | LRR_typ_2 | 43 | 66 | 0.14 |
| 18 | g15761.t1 | SMART | SM00365 | LRR_sd22_2 | 67 | 96 | 10.0 |
| 15 | g15761.t1 | SMART | SM00369 | LRR_typ_2 | 115 | 138 | 14.0 |
| 19 | g15761.t1 | SMART | SM00365 | LRR_sd22_2 | 115 | 133 | 31.0 |
| 14 | g15761.t1 | SMART | SM00369 | LRR_typ_2 | 139 | 162 | 110.0 |
| 7 | g15761.t1 | SUPERFAMILY | SSF52058 | L domain-like | 23 | 222 | 2.81E-32 |
| 13 | g15761.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 246 | 268 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed