Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Carboxypeptidase N subunit 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15763 g15763.t1 TSS g15763.t1 6693198 6693198
chr_4 g15763 g15763.t1 isoform g15763.t1 6693206 6699203
chr_4 g15763 g15763.t1 exon g15763.t1.exon1 6693206 6693278
chr_4 g15763 g15763.t1 cds g15763.t1.CDS1 6693206 6693278
chr_4 g15763 g15763.t1 exon g15763.t1.exon2 6693346 6693645
chr_4 g15763 g15763.t1 cds g15763.t1.CDS2 6693346 6693645
chr_4 g15763 g15763.t1 exon g15763.t1.exon3 6693706 6695056
chr_4 g15763 g15763.t1 cds g15763.t1.CDS3 6693706 6695056
chr_4 g15763 g15763.t1 exon g15763.t1.exon4 6695124 6695935
chr_4 g15763 g15763.t1 cds g15763.t1.CDS4 6695124 6695935
chr_4 g15763 g15763.t1 exon g15763.t1.exon5 6696492 6696563
chr_4 g15763 g15763.t1 cds g15763.t1.CDS5 6696492 6696563
chr_4 g15763 g15763.t1 exon g15763.t1.exon6 6696629 6696928
chr_4 g15763 g15763.t1 cds g15763.t1.CDS6 6696629 6696928
chr_4 g15763 g15763.t1 exon g15763.t1.exon7 6697133 6698558
chr_4 g15763 g15763.t1 cds g15763.t1.CDS7 6697133 6698558
chr_4 g15763 g15763.t1 exon g15763.t1.exon8 6698621 6699203
chr_4 g15763 g15763.t1 cds g15763.t1.CDS8 6698621 6699203
chr_4 g15763 g15763.t1 TTS g15763.t1 6699410 6699410

Sequences

>g15763.t1 Gene=g15763 Length=4917
ATGAGATTTTTATTGCCCTTTGTCTTTTTTATTTTGATAACATTTGTTACATCAAAAAGA
AGCGATGATGATGATCCATGTAAACATTCTATTTGTGGACCTCATTCAAGTTGCATAAGT
TTTCAAAATTCATTCGATTGTTCCTGTCTTGAAGGCTTCATTGGAAATCCGCCAAATTGT
CGTCAACCAGAATGTTTCTTAGATTCTCAATGTCCAAATGATAGAGCATGCTATCAAGCA
AGATGCACTGACTATTGTTTACCTCAACGTTGTACTGATAACAAAAAGTGTGTGATGATT
GATCATCGACCAACTTGTGTTTGTGAAGCTGGATTTTTGGACGATGTAAATGGAGAATGC
ATTGAAAATCCGAATATCATTCAAGGTTTAATTGAAGTTGAAAATTCTTTTGAATTTTAT
GAAAAATTCGATGAATTTTCATCAGTTTATCCAAATACGACTTTATTGACTTTTAAAGTT
AAAAACGAAACAGAAATTTTTGAAAATAATTCTGATATTTCAAGTTCATTCAAAAATGAT
ACAGTTGAAGGGTTTTTAATGGTAAATCCTTCATTTTCCAATGGAGAATTTCAATTTGAT
GAAAACAGTGTAAAATTTTTGCCAGTCAATGTTTACGAAATTTTCCCAAATTTGAAGTCA
TTCATATTTCGAGGTTCTACAGTTCAAGTACTTGAGAAGAAAAATTTTGAAAAATTGACA
AAATTAGAAAATCTTGATCTAATGGAAAACAGAATCCGCGTAATTAAGGAAAATACTTTT
GACGATTTGACTGAATTGAAATTTTTGTCGCTTCAAAATAACAAACTTGAAACTGTTGAC
AAAAGTTGGTTTGAAAAAACTAAAAAAATTGAAGTTTTGGATTTTTCTAAAAACGACATC
ATATTTGATCAGTCTCATCCTTTTTCAAATTTATTAAATCTTAATGCATTGCTTCTAAAT
CAATGCAATATTAAATCTAAAGATTTGAATATTTTTGAAGATTTGTCAAACCTAAAAGTT
CTTGATTTGACTTCAAACCGTTTTGAAAATTTTACTAGTGAAGTTTTGAAAAATTTGCCA
TCACTTGAAGAGTTGTCGCTTTCTAACAATAGACTAGGATTATTACCAGAAAACTATTTT
GTACACAATCCGAAACTTAAAAAAATAAATTTATTTACAAGTGATGTCGAAATTCAGTCT
GGAAATTTCGATGGATTAAGGAATCTCGAAGAAATTTCGGTGGCATTTATCAAGTCAGAA
ATCGAGTTGAAACGGCTTTTTAAAGATATAGAAAATTTAAAAGTTCTGAAAATAGGAGCA
AGTTCATTTAAAAAGCTTACTATTGCTGATATTGGACATTTGACAAAGCTTGAAGGTTTA
CATTTAATTTACAACGAACTTGAAAGTTTTGAAGACAAATTATTTGATAATTTAGCAAAT
TTAAAGGAAATTTATTTGAATACAAATCCCATAAAAATTCTTAATCCTGGAATTTTCGAC
AAATTACTTCAACTTGAGTCAATTACTATGGAAAAATTAGAAATTGAGAATTTACCAGCA
AACATTTTTAAAAATAATCGAAAACTCAAGAAAATTTTAATACGAGAAAACAAATTGACA
GCAATTGAATCAAACACTTTCAATGGACTATCAGAATTGAAATCACTTGACTTGAGATAT
AATAAAATTACTGAATTGCCTGATAAACTTTTTGATAATCTTAGATCACTAGAATTTCTT
GATGTGTCTGTATGTGGCATAAAAAATCTTCCGATCAGTTCGTTTAAAATGAATAAAAAT
CTTAGAAACTTGAAAATGAGTGGTAATGCATTTAAAACTATTCGGGCTGAAAATTTTGCA
ACTCTAACACAACTTGAAGAATTAGATTTGTCAACGAATTCCATCAAAACTTTAGATGAA
AATATTTTCGACAATTTAAGCAACTTGAAAGTTTTGGAATTATATTTATCAGAGTTGAAA
TCACTTGACGAAAGTATTTTCAAAAATTTGAGAAATATAGAAACTATTAAACTGTTTCGA
AATGAAATTATTGAAATTCCTGAAAATCTCTTTAAAAACAATCAAAAATTGATCGAGCTT
GATTTGAATGAAAACAAAATCACCTCATTGCATCCAAACACTTTCAATGGACTTCAAAAA
TTGAAAAATCTCAATTTGAATAAAAACCAACTGACAACTTTGGATCCAAATATTTTTACA
ACTAATATCAACTTGAGAAAAATTGAACTTGCTGAAAATCAACTCAATAATCTTCCAGAA
AATATTTTCAATAATTTGAAGCTACTTCAAGAAATAATCATGAATAATAATCAACTAACA
ACTTTGCTTGATAAAACTTTTGAACAAAACACAAAGTTAAAAGTCATGAAATTCAATTCA
AATCCATTACAGACAATTTCTTCGAAAATTTTCGAAAATAAACCAAATCTAAAAATAGCT
GGATTGAAAAATTGTGCATGTATTAACACTGAGCATGATTATACTTATCATACATATAGA
GAACCTATATTGACAAAATATTTTGATTTAAATGACTTTTTTATTTTGATAACATTTGTT
ACATCAAAACCTAATTCTAATGATAATGATCCATGTAAACATTCCGTTTGTGGACCTCAT
TCAAGTTGCATAAGTTTTCAAAATTCATTCTCTTGTACTTGTCTTGAAGGCTTTATTGGA
AATCCGCCAAATTGTCGTCAACCAGAATGTTTTCTTGATTCACATTGTTCAAGTGATAGA
GCATGTCATCGAGATATTTGCACAGACTATTGTTTATCTCAAAGTTGTACTGAAAACAAA
AAATGCCTCATGGTAAATCATCGACAAACTTGTGTTTGTGAAGCTGGATTTTTGGATAAC
GGAAAAGGAGAATGTTTTGAAAATCTAAATAAAATTCATGGTGCAATTATTACTGAAAAT
TCTTTGAAATATCATTATATGAGATTGTTAAAAGTTTATTCAAATACAACTTTATTGACT
TTTAGAGCTGATGATGATACAGAAATTAATGAACCAAATTTCGAAATTTCAAGTAACTTT
AAAAGTGATTTTGTCGAAGGCTTTTCAATGGGCTATCCAAGGCATACACCAAAAGGATTT
TCATTCATTCAACATAACAGAGGACATACAAAATTTCTGCCAGTGAGAGTCAATGAAATT
TTCCCAAATTTAATATCATACATATTTCAAGGTTCATTTGTTCATCAAGTTGAAAAGAAA
CATTTTGAGAATTTGAAAAAGTTGAAAAATCTGAATTTAATATATAACAAAATTAAGAAA
ATTGATGAAAATTCTTTTGATGATTTGACTGAACTGAAATTTCTTTCACTTCAAAATAAC
GATCTTGAGACAATTGATAAAAACTGGTTTAAAAACAATAAAAATATTGAAATTTTGGAT
TTTTCTCAAAATTACTTCAAAATTGATGATCCGAAACCTTTTTCGAATCTTCCGAATCTC
AATGCATTGCTTTTAAGCCAATGTTCCAAAGAATTTGTAGATTTTAATATTCTTAAAAAT
TTACCGAAGTTGAGATATCTTGATTTGCGTGTCAATGAAATTGAAAACTTTAATAATGAA
ATTTTAAGCAGTTTGCCATCACTCGAAGAATTATCAGTTGAATACAGTACGATTGGAGAG
TTATTTGAAAATCATTTTGTAAACAATAAAAAGCTCAAAAACTTGAATTTATTAGGAAAT
CAAATTAAAGTTCAACCTGGAACACTCAATGGATTGAAAGACCTTGAAGAAATTTGGTTA
AGTAACATCAAATCTGCAGAAATTTTTCAAAGCCTTTTTAGAGATACAAAAAATTTGAAA
ACTTTAAAAATAGGAGGAGGAGAATTTCAGAGACTCACTGCTGAAGATATTGGATTTTTG
ACACAACTTGAAGGTCTTTCTATATTTTATTCTAAACTGGAAAACTTTGAAGATAACTTA
TTTGACAATTTTGTTAACTTGAAGGAAATTTATTTGAGTAATAATCCTGTAAAGATTCTT
AATTCTGGAATTTTTAACAGATTAATTCAACTTGAGTCAGTAACAATGCAAAAATTAGAA
ATTGAAAGCTTACCAGCAGACATCTTTGAAAATAATCGAAAACTCAAGAAAATTTTGATA
AGAGAGAATAAATTGACAGCAATTGATTCAAATACTTTTAATGAATTATCAAAACTGGAG
TTACTTATTTTAAGTCATAATAAAATTACTGAATTACCTGAAGGTATTTTCGCATCGCTG
ACAAATTTAAAGGAACTTGAATTGACAGGAAATTCGATTAAGATATATTCTGAAAAACTA
TTTGAAAACCTTAAATCACTTGAATTTCTTGACGTTTCTTATTGTGGTTTAGAAGAACTT
CCAATTAATATATTCAAAAAGACTAAAAATCTCAAAGAATTGAAACTTGCTGGTAACAAA
CTAAAAATTATTCATGCTGAACATTTTGCAAGTCTAACACAACTTGAAGAATTACGTTTG
TCATACAATTCTATCACAACTTTAAGTCTTGACGTTTTCGACAGTTTAAGCAACTTGAAA
GTTTTGGCAATGAATTCACTAAATTTTAAATATAGTGACACAAACACAGGAGATACAGCT
TATGAAATTGACACTATTGAAATTCCTGAAAATCTCTTTAAAAACAATCAAAAGTTGATC
GAGCTTGATTTGAATGAAAATAAAATCACTTCTCTGCATCCAAACACTTTCAATGGACTT
CAAAAATTGAAAAATCTCAATTTGAATAATAATCAACTAACAACTTTGTTTGATAAAACT
TTTGAACAAAACACAAAGTTAAAAGTCATGAAATTCAATTCAAATCCATTACAGACAATT
TCTTCAAAAATTTTCGAAAAAAACCAATATAATGGTGGCTGGATTAAAAAACTGTAA

>g15763.t1 Gene=g15763 Length=1638
MRFLLPFVFFILITFVTSKRSDDDDPCKHSICGPHSSCISFQNSFDCSCLEGFIGNPPNC
RQPECFLDSQCPNDRACYQARCTDYCLPQRCTDNKKCVMIDHRPTCVCEAGFLDDVNGEC
IENPNIIQGLIEVENSFEFYEKFDEFSSVYPNTTLLTFKVKNETEIFENNSDISSSFKND
TVEGFLMVNPSFSNGEFQFDENSVKFLPVNVYEIFPNLKSFIFRGSTVQVLEKKNFEKLT
KLENLDLMENRIRVIKENTFDDLTELKFLSLQNNKLETVDKSWFEKTKKIEVLDFSKNDI
IFDQSHPFSNLLNLNALLLNQCNIKSKDLNIFEDLSNLKVLDLTSNRFENFTSEVLKNLP
SLEELSLSNNRLGLLPENYFVHNPKLKKINLFTSDVEIQSGNFDGLRNLEEISVAFIKSE
IELKRLFKDIENLKVLKIGASSFKKLTIADIGHLTKLEGLHLIYNELESFEDKLFDNLAN
LKEIYLNTNPIKILNPGIFDKLLQLESITMEKLEIENLPANIFKNNRKLKKILIRENKLT
AIESNTFNGLSELKSLDLRYNKITELPDKLFDNLRSLEFLDVSVCGIKNLPISSFKMNKN
LRNLKMSGNAFKTIRAENFATLTQLEELDLSTNSIKTLDENIFDNLSNLKVLELYLSELK
SLDESIFKNLRNIETIKLFRNEIIEIPENLFKNNQKLIELDLNENKITSLHPNTFNGLQK
LKNLNLNKNQLTTLDPNIFTTNINLRKIELAENQLNNLPENIFNNLKLLQEIIMNNNQLT
TLLDKTFEQNTKLKVMKFNSNPLQTISSKIFENKPNLKIAGLKNCACINTEHDYTYHTYR
EPILTKYFDLNDFFILITFVTSKPNSNDNDPCKHSVCGPHSSCISFQNSFSCTCLEGFIG
NPPNCRQPECFLDSHCSSDRACHRDICTDYCLSQSCTENKKCLMVNHRQTCVCEAGFLDN
GKGECFENLNKIHGAIITENSLKYHYMRLLKVYSNTTLLTFRADDDTEINEPNFEISSNF
KSDFVEGFSMGYPRHTPKGFSFIQHNRGHTKFLPVRVNEIFPNLISYIFQGSFVHQVEKK
HFENLKKLKNLNLIYNKIKKIDENSFDDLTELKFLSLQNNDLETIDKNWFKNNKNIEILD
FSQNYFKIDDPKPFSNLPNLNALLLSQCSKEFVDFNILKNLPKLRYLDLRVNEIENFNNE
ILSSLPSLEELSVEYSTIGELFENHFVNNKKLKNLNLLGNQIKVQPGTLNGLKDLEEIWL
SNIKSAEIFQSLFRDTKNLKTLKIGGGEFQRLTAEDIGFLTQLEGLSIFYSKLENFEDNL
FDNFVNLKEIYLSNNPVKILNSGIFNRLIQLESVTMQKLEIESLPADIFENNRKLKKILI
RENKLTAIDSNTFNELSKLELLILSHNKITELPEGIFASLTNLKELELTGNSIKIYSEKL
FENLKSLEFLDVSYCGLEELPINIFKKTKNLKELKLAGNKLKIIHAEHFASLTQLEELRL
SYNSITTLSLDVFDSLSNLKVLAMNSLNFKYSDTNTGDTAYEIDTIEIPENLFKNNQKLI
ELDLNENKITSLHPNTFNGLQKLKNLNLNNNQLTTLFDKTFEQNTKLKVMKFNSNPLQTI
SSKIFEKNQYNGGWIKKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
50 g15763.t1 CDD cd00054 EGF_CA 23 60 3.09184E-5
51 g15763.t1 CDD cd00054 EGF_CA 868 905 1.2645E-5
38 g15763.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 190 418 8.0E-38
42 g15763.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 419 509 7.4E-12
40 g15763.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 510 653 9.3E-35
43 g15763.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 654 838 9.2E-35
36 g15763.t1 Gene3D G3DSA:2.10.25.10 Laminin 859 907 3.0E-5
37 g15763.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 1049 1245 1.2E-32
44 g15763.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 1246 1354 4.9E-15
41 g15763.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 1355 1543 7.5E-44
39 g15763.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 1544 1632 1.6E-16
14 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 199 300 8.6E-196
24 g15763.t1 PANTHER PTHR45617 - 199 300 8.6E-196
16 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 305 436 8.6E-196
26 g15763.t1 PANTHER PTHR45617 - 305 436 8.6E-196
15 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 398 566 8.6E-196
25 g15763.t1 PANTHER PTHR45617 - 398 566 8.6E-196
11 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 508 638 8.6E-196
21 g15763.t1 PANTHER PTHR45617 - 508 638 8.6E-196
18 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 536 693 8.6E-196
28 g15763.t1 PANTHER PTHR45617 - 536 693 8.6E-196
12 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 633 923 8.6E-196
22 g15763.t1 PANTHER PTHR45617 - 633 923 8.6E-196
19 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 1063 1214 8.6E-196
29 g15763.t1 PANTHER PTHR45617 - 1063 1214 8.6E-196
20 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 1151 1339 8.6E-196
30 g15763.t1 PANTHER PTHR45617 - 1151 1339 8.6E-196
17 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 1332 1529 8.6E-196
27 g15763.t1 PANTHER PTHR45617 - 1332 1529 8.6E-196
13 g15763.t1 PANTHER PTHR45617:SF69 SI:DKEY-1J5.4 1543 1626 8.6E-196
23 g15763.t1 PANTHER PTHR45617 - 1543 1626 8.6E-196
1 g15763.t1 Pfam PF13855 Leucine rich repeat 216 276 3.8E-10
4 g15763.t1 Pfam PF13855 Leucine rich repeat 336 392 1.2E-9
5 g15763.t1 Pfam PF13855 Leucine rich repeat 456 511 9.8E-8
10 g15763.t1 Pfam PF13306 BspA type Leucine rich repeat region (6 copies) 517 650 6.2E-14
7 g15763.t1 Pfam PF13306 BspA type Leucine rich repeat region (6 copies) 685 818 2.7E-14
3 g15763.t1 Pfam PF13855 Leucine rich repeat 1073 1122 1.6E-10
9 g15763.t1 Pfam PF13306 BspA type Leucine rich repeat region (6 copies) 1183 1285 0.0019
8 g15763.t1 Pfam PF13306 BspA type Leucine rich repeat region (6 copies) 1315 1447 4.3E-14
2 g15763.t1 Pfam PF13855 Leucine rich repeat 1470 1525 7.5E-11
6 g15763.t1 Pfam PF13855 Leucine rich repeat 1548 1593 2.6E-9
46 g15763.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
47 g15763.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
48 g15763.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 13 -
49 g15763.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 18 -
45 g15763.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 1638 -
52 g15763.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 47 60 -
53 g15763.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 892 905 -
155 g15763.t1 ProSiteProfiles PS50026 EGF-like domain profile. 23 61 13.302
129 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 241 262 6.534
148 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 265 286 6.488
143 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 337 358 6.38
151 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 361 382 6.965
141 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 456 477 5.879
130 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 480 501 5.379
134 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 528 549 5.04
126 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 552 573 7.928
145 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 576 597 5.433
138 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 600 621 5.802
135 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 624 645 7.219
136 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 648 669 5.009
144 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 672 693 5.356
122 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 696 717 7.273
128 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 720 741 7.335
142 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 744 765 6.549
150 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 768 789 5.032
123 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 792 813 4.847
156 g15763.t1 ProSiteProfiles PS50026 EGF-like domain profile. 868 906 14.156
153 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1087 1108 7.527
127 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1111 1132 6.364
154 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1135 1158 5.094
137 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1183 1204 6.819
146 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1231 1253 6.241
149 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1326 1347 5.771
124 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1374 1395 4.924
139 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1398 1419 7.912
147 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1422 1443 5.556
133 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1446 1467 5.517
132 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1470 1491 6.141
131 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1494 1515 6.642
125 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1558 1579 7.273
152 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1582 1603 7.412
140 g15763.t1 ProSiteProfiles PS51450 Leucine-rich repeat profile. 1606 1627 5.001
97 g15763.t1 SMART SM00179 egfca_6 23 61 7.5E-4
121 g15763.t1 SMART SM00181 egf_5 26 61 0.0077
119 g15763.t1 SMART SM00181 egf_5 81 121 17.0
78 g15763.t1 SMART SM00369 LRR_typ_2 239 262 0.66
111 g15763.t1 SMART SM00365 LRR_sd22_2 239 260 39.0
85 g15763.t1 SMART SM00369 LRR_typ_2 263 286 0.26
101 g15763.t1 SMART SM00365 LRR_sd22_2 263 295 29.0
84 g15763.t1 SMART SM00369 LRR_typ_2 335 358 3.3
109 g15763.t1 SMART SM00365 LRR_sd22_2 335 361 79.0
60 g15763.t1 SMART SM00364 LRR_bac_2 359 378 9.4
71 g15763.t1 SMART SM00369 LRR_typ_2 359 382 0.037
73 g15763.t1 SMART SM00369 LRR_typ_2 454 477 1.8
116 g15763.t1 SMART SM00365 LRR_sd22_2 454 475 720.0
66 g15763.t1 SMART SM00369 LRR_typ_2 478 501 0.75
106 g15763.t1 SMART SM00365 LRR_sd22_2 478 496 450.0
68 g15763.t1 SMART SM00369 LRR_typ_2 502 525 220.0
65 g15763.t1 SMART SM00369 LRR_typ_2 527 549 130.0
58 g15763.t1 SMART SM00364 LRR_bac_2 550 569 7.8
70 g15763.t1 SMART SM00369 LRR_typ_2 550 573 6.7E-5
114 g15763.t1 SMART SM00365 LRR_sd22_2 550 576 11.0
92 g15763.t1 SMART SM00369 LRR_typ_2 574 597 38.0
54 g15763.t1 SMART SM00364 LRR_bac_2 622 641 450.0
96 g15763.t1 SMART SM00369 LRR_typ_2 622 645 3.5E-4
102 g15763.t1 SMART SM00365 LRR_sd22_2 622 648 19.0
94 g15763.t1 SMART SM00369 LRR_typ_2 646 669 13.0
64 g15763.t1 SMART SM00369 LRR_typ_2 670 693 11.0
108 g15763.t1 SMART SM00365 LRR_sd22_2 694 726 330.0
74 g15763.t1 SMART SM00369 LRR_typ_2 695 717 0.46
57 g15763.t1 SMART SM00364 LRR_bac_2 718 738 240.0
91 g15763.t1 SMART SM00369 LRR_typ_2 718 741 0.033
95 g15763.t1 SMART SM00369 LRR_typ_2 743 765 18.0
59 g15763.t1 SMART SM00364 LRR_bac_2 744 761 240.0
61 g15763.t1 SMART SM00364 LRR_bac_2 766 785 590.0
77 g15763.t1 SMART SM00369 LRR_typ_2 766 789 1.1
104 g15763.t1 SMART SM00365 LRR_sd22_2 790 816 450.0
89 g15763.t1 SMART SM00369 LRR_typ_2 791 813 130.0
98 g15763.t1 SMART SM00179 egfca_6 868 906 3.6E-4
120 g15763.t1 SMART SM00181 egf_5 871 906 0.0031
118 g15763.t1 SMART SM00181 egf_5 930 966 130.0
87 g15763.t1 SMART SM00369 LRR_typ_2 1085 1108 2.5
103 g15763.t1 SMART SM00365 LRR_sd22_2 1085 1106 140.0
75 g15763.t1 SMART SM00369 LRR_typ_2 1109 1132 0.11
105 g15763.t1 SMART SM00365 LRR_sd22_2 1109 1127 330.0
112 g15763.t1 SMART SM00365 LRR_sd22_2 1133 1159 150.0
69 g15763.t1 SMART SM00369 LRR_typ_2 1181 1204 16.0
117 g15763.t1 SMART SM00365 LRR_sd22_2 1181 1199 150.0
76 g15763.t1 SMART SM00369 LRR_typ_2 1300 1323 140.0
82 g15763.t1 SMART SM00369 LRR_typ_2 1324 1347 10.0
115 g15763.t1 SMART SM00365 LRR_sd22_2 1324 1346 490.0
93 g15763.t1 SMART SM00369 LRR_typ_2 1348 1371 100.0
83 g15763.t1 SMART SM00369 LRR_typ_2 1373 1395 390.0
55 g15763.t1 SMART SM00364 LRR_bac_2 1396 1415 20.0
79 g15763.t1 SMART SM00369 LRR_typ_2 1396 1419 1.5E-5
113 g15763.t1 SMART SM00365 LRR_sd22_2 1396 1418 220.0
72 g15763.t1 SMART SM00369 LRR_typ_2 1420 1443 0.78
110 g15763.t1 SMART SM00365 LRR_sd22_2 1420 1446 4.0
62 g15763.t1 SMART SM00364 LRR_bac_2 1444 1463 110.0
88 g15763.t1 SMART SM00369 LRR_typ_2 1444 1467 1.5
90 g15763.t1 SMART SM00369 LRR_typ_2 1468 1491 82.0
99 g15763.t1 SMART SM00365 LRR_sd22_2 1468 1488 560.0
63 g15763.t1 SMART SM00364 LRR_bac_2 1492 1511 350.0
86 g15763.t1 SMART SM00369 LRR_typ_2 1492 1515 0.0027
107 g15763.t1 SMART SM00365 LRR_sd22_2 1492 1512 150.0
100 g15763.t1 SMART SM00365 LRR_sd22_2 1556 1588 330.0
81 g15763.t1 SMART SM00369 LRR_typ_2 1557 1579 0.46
56 g15763.t1 SMART SM00364 LRR_bac_2 1580 1599 42.0
67 g15763.t1 SMART SM00369 LRR_typ_2 1580 1603 0.23
80 g15763.t1 SMART SM00369 LRR_typ_2 1605 1627 180.0
33 g15763.t1 SUPERFAMILY SSF52058 L domain-like 195 510 5.53E-39
34 g15763.t1 SUPERFAMILY SSF52058 L domain-like 501 831 2.38E-52
31 g15763.t1 SUPERFAMILY SSF52058 L domain-like 1045 1365 4.67E-41
32 g15763.t1 SUPERFAMILY SSF52058 L domain-like 1273 1619 1.43E-50
35 g15763.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values