General information for g15763.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g15763 is located on chr_4: 6696268..6699203 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15763 | g15763.t2 | isoform | g15763.t2 | 6696268 | 6697618 |
| chr_4 | g15763 | g15763.t2 | exon | g15763.t2.exon1 | 6696268 | 6696301 |
| chr_4 | g15763 | g15763.t2 | exon | g15763.t2.exon2 | 6696359 | 6696563 |
| chr_4 | g15763 | g15763.t2 | exon | g15763.t2.exon3 | 6696629 | 6696928 |
| chr_4 | g15763 | g15763.t2 | cds | g15763.t2.CDS1 | 6696850 | 6696928 |
| chr_4 | g15763 | g15763.t2 | exon | g15763.t2.exon4 | 6697133 | 6697618 |
| chr_4 | g15763 | g15763.t2 | cds | g15763.t2.CDS2 | 6697133 | 6697617 |
| chr_4 | g15763 | g15763.t2 | TSS | g15763.t2 | NA | NA |
| chr_4 | g15763 | g15763.t2 | TTS | g15763.t2 | NA | NA |
Sequences
>g15763.t2 Gene=g15763 Length=1025
TTAGTCAATTTAAAGATTTGGAGAGAACAAGGCGTGCTATTTATTTGTGTGTTGCATAAG
AGCTTCAAATTTAAAAGTAAAAAAAAATTTACTTTCAAATGTCTTAAATTCAGTAAGTGT
TTTGAATATTTTTATCCTAAGTTAAATTTGTAAACAATTTTCAAAAGAATATTTTGATTT
AAATGACTTTTTTATTTTGATAACATTTGTTACATCAAAACCTAATTCTAATGATAATGA
TCCATGTAAACATTCCGTTTGTGGACCTCATTCAAGTTGCATAAGTTTTCAAAATTCATT
CTCTTGTACTTGTCTTGAAGGCTTTATTGGAAATCCGCCAAATTGTCGTCAACCAGAATG
TTTTCTTGATTCACATTGTTCAAGTGATAGAGCATGTCATCGAGATATTTGCACAGACTA
TTGTTTATCTCAAAGTTGTACTGAAAACAAAAAATGCCTCATGGTAAATCATCGACAAAC
TTGTGTTTGTGAAGCTGGATTTTTGGATAACGGAAAAGGAGAATGTTTTGAAAATCTAAA
TAAAATTCATGGTGCAATTATTACTGAAAATTCTTTGAAATATCATTATATGAGATTGTT
AAAAGTTTATTCAAATACAACTTTATTGACTTTTAGAGCTGATGATGATACAGAAATTAA
TGAACCAAATTTCGAAATTTCAAGTAACTTTAAAAGTGATTTTGTCGAAGGCTTTTCAAT
GGGCTATCCAAGGCATACACCAAAAGGATTTTCATTCATTCAACATAACAGAGGACATAC
AAAATTTCTGCCAGTGAGAGTCAATGAAATTTTCCCAAATTTAATATCATACATATTTCA
AGGTTCATTTGTTCATCAAGTTGAAAAGAAACATTTTGAGAATTTGAAAAAGTTGAAAAA
TCTGAATTTAATATATAACAAAATTAAGAAAATTGATGAAAATTCTTTTGATGATTTGAC
TGAACTGAAATTTCTTTCACTTCAAAATAACGATCTTGAGACAATTGATAAAAACTGGTT
TAAAA
>g15763.t2 Gene=g15763 Length=188
MVNHRQTCVCEAGFLDNGKGECFENLNKIHGAIITENSLKYHYMRLLKVYSNTTLLTFRA
DDDTEINEPNFEISSNFKSDFVEGFSMGYPRHTPKGFSFIQHNRGHTKFLPVRVNEIFPN
LISYIFQGSFVHQVEKKHFENLKKLKNLNLIYNKIKKIDENSFDDLTELKFLSLQNNDLE
TIDKNWFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g15763.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 95 | 188 | 0.000 |
| 1 | g15763.t2 | Pfam | PF13855 | Leucine rich repeat | 130 | 179 | 0.000 |
| 6 | g15763.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 144 | 165 | 7.527 |
| 7 | g15763.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 168 | 188 | 5.918 |
| 3 | g15763.t2 | SMART | SM00369 | LRR_typ_2 | 142 | 165 | 2.500 |
| 4 | g15763.t2 | SMART | SM00369 | LRR_typ_2 | 166 | 188 | 26.000 |
| 2 | g15763.t2 | SUPERFAMILY | SSF52058 | L domain-like | 118 | 187 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed