General information for g15764.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alpha-1,6-fucosyltransferase.
Parent gene
- The parent gene g15764 is located on chr_4: 6701526..6702940 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15764 | g15764.t2 | isoform | g15764.t2 | 6695056 | 6702940 |
| chr_4 | g15764 | g15764.t2 | exon | g15764.t2.exon1 | 6695056 | 6695105 |
| chr_4 | g15764 | g15764.t2 | exon | g15764.t2.exon2 | 6701218 | 6701612 |
| chr_4 | g15764 | g15764.t2 | cds | g15764.t2.CDS1 | 6701526 | 6701612 |
| chr_4 | g15764 | g15764.t2 | exon | g15764.t2.exon3 | 6701676 | 6701888 |
| chr_4 | g15764 | g15764.t2 | cds | g15764.t2.CDS2 | 6701676 | 6701888 |
| chr_4 | g15764 | g15764.t2 | exon | g15764.t2.exon4 | 6701981 | 6702259 |
| chr_4 | g15764 | g15764.t2 | cds | g15764.t2.CDS3 | 6701981 | 6702259 |
| chr_4 | g15764 | g15764.t2 | exon | g15764.t2.exon5 | 6702314 | 6702940 |
| chr_4 | g15764 | g15764.t2 | cds | g15764.t2.CDS4 | 6702314 | 6702940 |
| chr_4 | g15764 | g15764.t2 | TSS | g15764.t2 | NA | NA |
| chr_4 | g15764 | g15764.t2 | TTS | g15764.t2 | NA | NA |
Sequences
>g15764.t2 Gene=g15764 Length=1564
ATGAACGATGGTTATGAAGCATTCCGTCATAAAGAATCACAAGCACTCAGTGATCTCGTC
CAAAAGCGCTTTCATTATCTTCAAAATCCATCAGACTGTTCAACAGCACGAAAATTAGTT
TGTAAAATAAACAAAGGCTGTGGCTTAGGATGTCAGCTGCATCATATTGTTTACTGTTTT
ATTATGGCTTATGCAACAGAAAGAACATTAATTTTAAAATCAAAAGGTTGGCGATATCAT
AAAAATGGTTGGGAAGAAATCTACATGCCAGTTAGTGAAACTTGTCTTGATAGTGAAGGT
GAAACACAAGGAACTTGGCCATCAACAGACGTACAAGTATTGACAGTGCCAATTATTGAC
TCTCTTAATCCACGTCCACCATATTTACCACTAGCTATTCCAGCAGATTTAGCACCAAGA
TTAATAAGAATTCATGGTGATCCAATTGCATGGTGGATTGGACAACTTTTAAAATATATT
TTAAAACCACAACCAGAAACAGCAGAAATGTTAGAAAATGGTAAGAATAAACTTGGATTC
AAGAAACCAATTGTTGGCGTTCATGTGAGAAGAACTGACAAAGTCGGTACTGAGGCTGCT
TTTCATAGTCTTGATGAATACATGAAGGCAGTTGATGATTATTATGATCAACGAGAAATG
GTCGAAAGAATCGACAAACGAAGAGTTTATATAGCAAGTGATGATCCAAAAGTCATTGAT
GAAGCTAGAAGAAATTATCCACAATATGAAGTGATAGGAGATCCAGAAATTGCAAAACAT
GCAGCTGTATCAACAAGATACACAGACACATCACTAAATGGCATCATGTTAGACATTGAT
TTACTCTCAAAGAGTGATTTTCTCGTTTGTACTTTTAGTAGTCAAGTTTGTAGGGTTGCT
TATGAGATAATGCAATCAATGTATCCTGATGCCAGTAGTAGATTTAAGTCACTAGATGAC
ATTTATTATTATGGAGGTCAAAATGCACATAATGTGATAAGTGTCATGGACCATCAACCA
AAGAGTACTGATCAAATTTCAATGAAAACTGGTGATTTAATTGGAATTGCCGGCAATCAT
TGGAATGGTTTTTCAAAAGGCAAAAATATTAGAAATAATCAAAATGGACTATTTCCATCA
TTTAAAGTAAATAATAAAGTTGAAGTTGCAGATTTTCCAACATACAGTCACATCGATGAG
AATTAAATGATCACCAATCTCATAATAAAAAATATGAAAAAATTCATTCCTTTGAACTTC
TTCGACTTTCAAACAACTGTGAACAAAAATTTTTTATAATCAAATCTTATGAACAGAAAA
AAAGTCCAAGATGTCAAAAATAAATCGATCAAAGTATGAAAATTGCTGAAAAGTTTTATA
TATTAATTTAAAATCGATCAAATATGTAACAAATATATTTTTCTTGTTATTTTTTACGTT
CTATTTTTCTGTGTTCTTAGTAATTTAACATAGTGAGTTTTTATTTTTTTAGATACACAC
AAAAATATGAAAAAAAATTAAAATTCCATTTTAAAAAGATAATGTTATTTTTTATAAACT
TACC
>g15764.t2 Gene=g15764 Length=401
MNDGYEAFRHKESQALSDLVQKRFHYLQNPSDCSTARKLVCKINKGCGLGCQLHHIVYCF
IMAYATERTLILKSKGWRYHKNGWEEIYMPVSETCLDSEGETQGTWPSTDVQVLTVPIID
SLNPRPPYLPLAIPADLAPRLIRIHGDPIAWWIGQLLKYILKPQPETAEMLENGKNKLGF
KKPIVGVHVRRTDKVGTEAAFHSLDEYMKAVDDYYDQREMVERIDKRRVYIASDDPKVID
EARRNYPQYEVIGDPEIAKHAAVSTRYTDTSLNGIMLDIDLLSKSDFLVCTFSSQVCRVA
YEIMQSMYPDASSRFKSLDDIYYYGGQNAHNVISVMDHQPKSTDQISMKTGDLIGIAGNH
WNGFSKGKNIRNNQNGLFPSFKVNNKVEVADFPTYSHIDEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15764.t2 | CDD | cd11300 | Fut8_like | 3 | 324 | 0.0000000 |
| 9 | g15764.t2 | CDD | cd11792 | SH3_Fut8 | 331 | 385 | 0.0000000 |
| 4 | g15764.t2 | Gene3D | G3DSA:3.40.50.11350 | - | 4 | 331 | 0.0000000 |
| 5 | g15764.t2 | Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 332 | 386 | 0.0000000 |
| 2 | g15764.t2 | PANTHER | PTHR13132 | ALPHA- 1,6 -FUCOSYLTRANSFERASE | 4 | 396 | 0.0000000 |
| 1 | g15764.t2 | Pfam | PF14604 | Variant SH3 domain | 336 | 383 | 0.0000002 |
| 6 | g15764.t2 | ProSiteProfiles | PS51659 | Glycosyltransferase family 23 (GT23) domain profile. | 35 | 318 | 120.9590000 |
| 7 | g15764.t2 | ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 327 | 388 | 13.5390000 |
| 3 | g15764.t2 | SUPERFAMILY | SSF50044 | SH3-domain | 325 | 383 | 0.0000001 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K00717 (glycoprotein 6-alpha-L-fucosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
